| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr3g091570.1 |
| Family | GT5 |
| Protein Properties | Length: 656 Molecular Weight: 72410.6 Isoelectric Point: 5.9733 |
| Chromosome | Chromosome/Scaffold: 3 Start: 31177415 End: 31184709 |
| Description | Glycogen/starch synthases, ADP-glucose type |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 142 | 645 | 0 |
| NIVFVTSEAAPYSKTGGLADVCGSLPIALAGRGHRVMVISPRYIHGTAADSKFSGAVDLGSPINVFCFGGAQEVGFFHEYREGVDWVFVDHPSFHRPGNP YGDKHGTFKDNQFRFTLLSHAACEAPLVLPLGGFTYGEKCLFLVNDWHASLVSVLLASKYRPYGVYKDARSILVIHNIAHQGVEPAITYSNLGLPQEWYG ALGWVFPTWARTHALDTGEAVNFLKGAIVTADRIVTVSKGYSWEITTTEGGFGLQEILRDRKSILSGITNGIDVTEWDPSSDEHIASSYSADDLSGKVKC KIALQKELGLPVRPDCPVIGFVGRLDYQKGIDLIRQAIPELMQDDVQFVMLGSGNPIYEDWMRATESLYKDKFRGWVGFNVPVSHRITAGCDILLMPSTF EPCGLNQLYAMRYGTIPVVHETGGLRDTVQNFNPFAGGSGAEGCNAEGTGWTFSPLTKESMLVALRYAIQTYNEHKSSWEGLMKRGMTRDYTWEKAAAQY EQII | |||
| Full Sequence |
|---|
| Protein Sequence Length: 656 Download |
| MESLELPRLF LHHPRASSAP TRPHPHSTTN SSRFLPQFGF PSKLKNATLR SISVSSQDGP 60 ISFEDETQQL RHQDQEDEGR LLSREIDDFG SLVSFRLTPH SASASASGKT AETQGNLRSD 120 EVEKPEIGNA EDEKAQTIVT RNIVFVTSEA APYSKTGGLA DVCGSLPIAL AGRGHRVMVI 180 SPRYIHGTAA DSKFSGAVDL GSPINVFCFG GAQEVGFFHE YREGVDWVFV DHPSFHRPGN 240 PYGDKHGTFK DNQFRFTLLS HAACEAPLVL PLGGFTYGEK CLFLVNDWHA SLVSVLLASK 300 YRPYGVYKDA RSILVIHNIA HQGVEPAITY SNLGLPQEWY GALGWVFPTW ARTHALDTGE 360 AVNFLKGAIV TADRIVTVSK GYSWEITTTE GGFGLQEILR DRKSILSGIT NGIDVTEWDP 420 SSDEHIASSY SADDLSGKVK CKIALQKELG LPVRPDCPVI GFVGRLDYQK GIDLIRQAIP 480 ELMQDDVQFV MLGSGNPIYE DWMRATESLY KDKFRGWVGF NVPVSHRITA GCDILLMPST 540 FEPCGLNQLY AMRYGTIPVV HETGGLRDTV QNFNPFAGGS GAEGCNAEGT GWTFSPLTKE 600 SMLVALRYAI QTYNEHKSSW EGLMKRGMTR DYTWEKAAAQ YEQIIEWAFM DPPYC* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 7.0e-103 | 146 | 644 | 511 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 2.0e-147 | 142 | 642 | 509 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 1.0e-179 | 142 | 644 | 509 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 142 | 647 | 507 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| TIGR02095 | glgA | 0 | 142 | 644 | 504 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABV25893.1 | 0 | 74 | 654 | 62 | 631 | starch synthase isoform I [Manihot esculenta] |
| DDBJ | BAD18845.1 | 0 | 24 | 655 | 11 | 645 | starch synthase I precursor [Phaseolus vulgaris] |
| EMBL | CBI23015.1 | 0 | 81 | 654 | 2 | 566 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002277372.1 | 0 | 81 | 654 | 67 | 631 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002321996.1 | 0 | 50 | 654 | 56 | 647 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 142 | 645 | 11 | 508 | A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A Complex With Udp |
| PDB | 3vue_A | 0 | 142 | 645 | 11 | 508 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 1rzv_B | 0 | 142 | 645 | 2 | 476 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1rzv_A | 0 | 142 | 645 | 2 | 476 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1rzu_B | 0 | 142 | 645 | 2 | 476 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO595058 | 500 | 158 | 656 | 0 |
| EL610020 | 270 | 295 | 564 | 0 |
| GO872237 | 352 | 302 | 653 | 0 |
| HO581986 | 374 | 251 | 622 | 0 |
| HO581986 | 36 | 621 | 656 | 0.00005 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
