Basic Information | |
---|---|
Species | Medicago truncatula |
Cazyme ID | Medtr3g096330.1 |
Family | GH28 |
Protein Properties | Length: 776 Molecular Weight: 85473.9 Isoelectric Point: 8.3781 |
Chromosome | Chromosome/Scaffold: 3 Start: 33235991 End: 33240226 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 106 | 451 | 0 |
RGKGGSQLNIPNGTWLTGSFNLTSDFTLFLHHGAVVLGSQDIKEWPIIEPLPSYGRGRERLGGRHISLIHANGVRNVVITGENGTVDGQGRMWWELWWNR TLVHTRGHLLELMNSENVLVSNLTFRNSPFWTIHPVYCSNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDNYIESGDDLVAIKSGWDQYGIAVAKPST NIIVSRVSGTTPTCSGVGIGSEMSGGISNITIENLHVWNSAAGVRIKSDNGRGGYIKNVSISNIRMERVKIPIRFSRGSNDHPDDGWDPKAVPRFKDILI SNVISVNSTKAPVLEGVKGSSFEGLCFKNITFLGVALSATWHCEYV |
Full Sequence |
---|
Protein Sequence Length: 776 Download |
MESEKTTLMI LGSYTKPSCS ILFLFFTFLT ILSLQFSTRS LFPLSILLSQ QPQPSLVDPT 60 TCSGFFNNVP PRKIIKSIVD FGGVGDGKTS NTQSFQRAIR YMQRFRGKGG SQLNIPNGTW 120 LTGSFNLTSD FTLFLHHGAV VLGSQDIKEW PIIEPLPSYG RGRERLGGRH ISLIHANGVR 180 NVVITGENGT VDGQGRMWWE LWWNRTLVHT RGHLLELMNS ENVLVSNLTF RNSPFWTIHP 240 VYCSNVVIKG MTILAPLNAP NTDGIDPDSS TNVCIEDNYI ESGDDLVAIK SGWDQYGIAV 300 AKPSTNIIVS RVSGTTPTCS GVGIGSEMSG GISNITIENL HVWNSAAGVR IKSDNGRGGY 360 IKNVSISNIR MERVKIPIRF SRGSNDHPDD GWDPKAVPRF KDILISNVIS VNSTKAPVLE 420 GVKGSSFEGL CFKNITFLGV ALSATWHCEY VAGFTNGVFP LPCPELQNNG TSSCFRVLLK 480 QMILLHVKYE SFSLSPWLVP AVNSKTVITC ISCNLKTLIC KDLLHHSTVK KTLQNGIFTY 540 LVYWQKLRIK MKMKSHSSFF FTFLIVAFSS IQISLADCDN LHDTCPTSPS KKQTTFINGF 600 SCNNPSNTLA HDFKTMELSK AGSRDDFGSS INIVSASKFP GLNTLGISIG RTDIEVDGIV 660 NLHNHPRASE MIFVKEGVLD AGFLDTQNKV FQKSLKEGDV FVIPKGLFHF FLNRGVEVAT 720 VLSVYNSQNP GLGSLNATPP SSSESVEKIK RKLYELELDN VNDMSLDDVS EIIYS* 780 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-20 | 77 | 378 | 315 | + polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-24 | 78 | 390 | 333 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-26 | 77 | 445 | 390 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-31 | 174 | 451 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-54 | 77 | 422 | 370 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
GO:0045735 | nutrient reservoir activity |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN76963.1 | 0 | 11 | 469 | 1 | 459 | hypothetical protein [Vitis vinifera] |
EMBL | CBI37530.1 | 0 | 1 | 473 | 1 | 474 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002274138.1 | 0 | 1 | 473 | 1 | 474 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002310517.1 | 0 | 60 | 473 | 19 | 432 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526639.1 | 0 | 39 | 473 | 36 | 475 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 3e-39 | 68 | 444 | 22 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 3e-39 | 68 | 444 | 22 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 3e-39 | 68 | 444 | 22 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 3e-39 | 68 | 444 | 22 | 417 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2et7_A | 5e-22 | 576 | 732 | 1 | 160 | A Chain A, Structural And Spectroscopic Insights Into The Mechanism Of Oxalate Oxidase |