Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr3g117800.1 |
Family | GH10 |
Protein Properties | Length: 537 Molecular Weight: 61125.9 Isoelectric Point: 5.9382 |
Chromosome | Chromosome/Scaffold: 3 Start: 42916521 End: 42918931 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 192 | 451 | 0 |
SKDFPIGSAIAKTILGNIPYQNWFLKRFNAAVFENELKWYATEPHEGSVNYTISDQMMQFVRANKIIARGHNIFWEDPKYNPAWVLNLTGTQLRSAVNSR IQSLMNQYKTEFIHWDISNEMLHFDFYEQRLGPNATFHFFEAAHESDPLATLFMNDFNVVETCSDVNSSVDAYISRIRELRQYGVFMDGIGLEGHFTIPN LPLIRAILDKLATLDLPVWLTEIDISNTLDHDTQAIYLEQVLREGFSHPSVNGIMLWTAL |
Full Sequence |
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Protein Sequence Length: 537 Download |
MLLNTGSSSN GPLYDFTAYT QVCKEHPEKP LYGGGVFNIK DKGNAVNNTN INMPSSLVLY 60 NLTYDTIYSF SVWVKVEYSD SVMIKAKLET ENETYNCIGT VLAKRGCWSF LKGGFLLNSP 120 SNSSTIFFHN SDGKDVDIDI ASQSLQPFTQ HQWRINQQYI INTKRKRAVT VHVSDPNGRK 180 LQGASVFVEQ ISKDFPIGSA IAKTILGNIP YQNWFLKRFN AAVFENELKW YATEPHEGSV 240 NYTISDQMMQ FVRANKIIAR GHNIFWEDPK YNPAWVLNLT GTQLRSAVNS RIQSLMNQYK 300 TEFIHWDISN EMLHFDFYEQ RLGPNATFHF FEAAHESDPL ATLFMNDFNV VETCSDVNSS 360 VDAYISRIRE LRQYGVFMDG IGLEGHFTIP NLPLIRAILD KLATLDLPVW LTEIDISNTL 420 DHDTQAIYLE QVLREGFSHP SVNGIMLWTA LHPYGCYQMC LTDNDFNNLP SGDVVDKLLQ 480 EWQTSSVQGI TDEHGSHSFY GFLGEYRIRV EYRNKTINST FSLCRGEETK HVPVTL* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 3.0e-34 | 182 | 432 | 264 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 4.0e-59 | 189 | 448 | 276 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 3.0e-74 | 228 | 475 | 269 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37893.1 | 0 | 8 | 536 | 98 | 625 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_195577.2 | 0 | 6 | 536 | 23 | 562 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
RefSeq | XP_002277675.1 | 0 | 10 | 536 | 24 | 549 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002446197.1 | 0 | 7 | 536 | 34 | 565 | hypothetical protein SORBIDRAFT_06g003350 [Sorghum bicolor] |
RefSeq | XP_002534153.1 | 0 | 71 | 536 | 8 | 473 | Endo-1,4-beta-xylanase A precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1v6y_A | 2e-29 | 198 | 454 | 17 | 281 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 1nq6_A | 3e-29 | 197 | 475 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 2g4f_B | 3e-27 | 198 | 416 | 17 | 239 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 2g4f_A | 3e-27 | 198 | 416 | 17 | 239 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 2g3j_A | 3e-27 | 198 | 416 | 17 | 239 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES803339 | 253 | 182 | 434 | 0 |
GR953916 | 292 | 171 | 462 | 0 |
DY024035 | 263 | 251 | 510 | 0 |
CX705541 | 238 | 300 | 537 | 0 |
GO498667 | 220 | 270 | 489 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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