| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr3g118390.1 |
| Family | GH19 |
| Protein Properties | Length: 325 Molecular Weight: 34806 Isoelectric Point: 7.3806 |
| Chromosome | Chromosome/Scaffold: 3 Start: 43169041 End: 43170015 |
| Description | basic chitinase |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH19 | 70 | 302 | 0 |
| SLISRDTFNNMLKHRDDSGCQGKRLYTYDAFISAAKAFPNFANNGDTATKKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVREQNPSSTYCQPSSEF PCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGRWSPSSADRAAGRLPGYGTVTNIINGGLE CGRGQDGRVQDRIGFYKRYCDILGVGYGDNLDC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 325 Download |
| MMRLALVVTT AVLLVIIGCS FAEQCGKQAG GALCPGGLCC SKFGWCGSTG DYCGDGCQSQ 60 CSGSSGDLGS LISRDTFNNM LKHRDDSGCQ GKRLYTYDAF ISAAKAFPNF ANNGDTATKK 120 REIAAFLGQT SHETTGGWAT APDGPYAWGY CFVREQNPSS TYCQPSSEFP CASGKQYYGR 180 GPIQISWNYN YGQCGRAIGV DLLNNPDLVA TDPVISFKTA LWFWMTPQSP KPSCHDVITG 240 RWSPSSADRA AGRLPGYGTV TNIINGGLEC GRGQDGRVQD RIGFYKRYCD ILGVGYGDNL 300 DCFSQRPFGS SLSLSSLFLN SIDT* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3179 | COG3179 | 8.0e-10 | 103 | 278 | 205 | + Predicted chitinase [General function prediction only] | ||
| cd00442 | lysozyme_like | 1.0e-16 | 124 | 264 | 141 | + lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides. | ||
| cd00325 | chitinase_glyco_hydro_19 | 2.0e-143 | 72 | 302 | 231 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. | ||
| pfam00182 | Glyco_hydro_19 | 9.0e-154 | 72 | 302 | 231 | + Chitinase class I. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004568 | chitinase activity |
| GO:0006032 | chitin catabolic process |
| GO:0008061 | chitin binding |
| GO:0016998 | cell wall macromolecule catabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAB41324.1 | 0 | 1 | 324 | 2 | 327 | class I chitinase [Medicago sativa] |
| GenBank | AAP03088.1 | 0 | 23 | 322 | 27 | 326 | class Ia chitinase [Galega orientalis] |
| GenBank | AAV66072.1 | 0 | 2 | 324 | 5 | 328 | chitinase [Medicago sativa] |
| EMBL | CAA71402.1 | 0 | 1 | 324 | 2 | 325 | chitinase [Medicago truncatula] |
| Swiss-Prot | P21226 | 0 | 6 | 309 | 4 | 308 | CHI2_PEA RecName: Full=Endochitinase A2; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3iwr_B | 0 | 23 | 316 | 2 | 308 | A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of Halothermothrix Orenii |
| PDB | 3iwr_A | 0 | 23 | 316 | 2 | 308 | A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of Halothermothrix Orenii |
| PDB | 2dkv_A | 0 | 23 | 316 | 2 | 308 | A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa L. Japonica |
| PDB | 3cql_B | 0 | 68 | 309 | 2 | 243 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
| PDB | 3cql_A | 0 | 68 | 309 | 2 | 243 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
