Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr4g034020.1 |
Family | GH28 |
Protein Properties | Length: 374 Molecular Weight: 40638.4 Isoelectric Point: 5.3321 |
Chromosome | Chromosome/Scaffold: 4 Start: 10573900 End: 10579249 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 26 | 358 | 0 |
KRDSDTPTLLVPSGKTFLLNPLKFRGPCSFSPVHFQLEGNIVAPSSSEAWKDEDYTKWIVFYYIHGIIIDGGGQIDGQGSTWWKTNCSVTNCPRPTALHI DNCSNLQLNGTHHLNSARNHISIDYSDHVNIFKINITAPQESPNTDGIDIGHSSYVLIQDSTIATGDDCIAMNNGTSNINITGVTCGPGHGISVGSLGEN GAYEIVEQVYVKNCTFIRTENGMRIKTWPGGSGYARNISFEQIILTETKNPIIIDQNYRDLVIDKANNMQKSEVQISGVTYRDVIGTSNSKTSIKLNCNK NSGCTDIFMDVVNITSISGKTTKASCKNAHGEA |
Full Sequence |
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Protein Sequence Length: 374 Download |
MDYGAVGDGL TDDSQVFLKV WNDICKRDSD TPTLLVPSGK TFLLNPLKFR GPCSFSPVHF 60 QLEGNIVAPS SSEAWKDEDY TKWIVFYYIH GIIIDGGGQI DGQGSTWWKT NCSVTNCPRP 120 TALHIDNCSN LQLNGTHHLN SARNHISIDY SDHVNIFKIN ITAPQESPNT DGIDIGHSSY 180 VLIQDSTIAT GDDCIAMNNG TSNINITGVT CGPGHGISVG SLGENGAYEI VEQVYVKNCT 240 FIRTENGMRI KTWPGGSGYA RNISFEQIIL TETKNPIIID QNYRDLVIDK ANNMQKSEVQ 300 ISGVTYRDVI GTSNSKTSIK LNCNKNSGCT DIFMDVVNIT SISGKTTKAS CKNAHGEASS 360 TSPYVPCLSQ DSD* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 8.0e-81 | 2 | 355 | 360 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 8.0e-82 | 33 | 360 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-89 | 2 | 371 | 374 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-109 | 3 | 373 | 374 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 4.0e-114 | 1 | 372 | 372 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 1 | 370 | 33 | 398 | PGN [Glycine max] |
GenBank | ABO81149.1 | 0 | 1 | 373 | 1 | 373 | Glycoside hydrolase, family 28 [Medicago truncatula] |
EMBL | CAA20037.1 | 0 | 1 | 372 | 17 | 372 | putative polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_195292.2 | 0 | 1 | 372 | 27 | 392 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 1 | 369 | 30 | 395 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 2e-24 | 34 | 323 | 26 | 304 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-24 | 34 | 323 | 26 | 304 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-24 | 34 | 323 | 26 | 304 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-24 | 34 | 323 | 26 | 304 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 2e-24 | 34 | 323 | 26 | 304 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CX192293 | 283 | 34 | 314 | 0 |
EY474520 | 252 | 120 | 371 | 0 |
GT141262 | 234 | 138 | 371 | 0 |
CV536748 | 262 | 64 | 323 | 0 |
CV538127 | 234 | 25 | 256 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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