Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr4g051810.1 |
Family | CE8 |
Protein Properties | Length: 324 Molecular Weight: 36312.3 Isoelectric Point: 8.8359 |
Chromosome | Chromosome/Scaffold: 4 Start: 15437307 End: 15440282 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 37 | 312 | 0 |
ITVDQKGRGMFKRIQQAVDSIKHNNDRWIKIQIMPGKYREEISIPYDKPCIILKGSDRRTTTIYDDDIQSKAIFTSSPPNVVLSGITIENTHGSNGKAVA ATIFGNNSAIFDCSFLGYQDTLWDALGRHYYKNCYIQGEVDFIFGQAQSYFEDCVINATQGHAQPAGFITAQRRYSSTESTGFIFKGGRVEGIGKVHLGR AWGPYSRVLFWGTHLSAVVLPQGWNAWNYQGQENNFVYAEIDCTGPGANTRERVKWTKKQHKEINIQEYSLSSFIN |
Full Sequence |
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Protein Sequence Length: 324 Download |
MVLSTRSMVF NVILFIGYCF CLGRAIDCGG NLVAKTITVD QKGRGMFKRI QQAVDSIKHN 60 NDRWIKIQIM PGKYREEISI PYDKPCIILK GSDRRTTTIY DDDIQSKAIF TSSPPNVVLS 120 GITIENTHGS NGKAVAATIF GNNSAIFDCS FLGYQDTLWD ALGRHYYKNC YIQGEVDFIF 180 GQAQSYFEDC VINATQGHAQ PAGFITAQRR YSSTESTGFI FKGGRVEGIG KVHLGRAWGP 240 YSRVLFWGTH LSAVVLPQGW NAWNYQGQEN NFVYAEIDCT GPGANTRERV KWTKKQHKEI 300 NIQEYSLSSF INKDGWLAHI PKL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02682 | PLN02682 | 6.0e-71 | 32 | 319 | 312 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 6.0e-75 | 35 | 317 | 294 | + Probable pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-82 | 37 | 317 | 291 | + putative pectinesterase | ||
PLN02176 | PLN02176 | 2.0e-87 | 33 | 321 | 302 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 6.0e-99 | 19 | 321 | 317 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002318946.1 | 0 | 12 | 321 | 11 | 338 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330032.1 | 0 | 12 | 321 | 10 | 323 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515259.1 | 0 | 24 | 321 | 348 | 660 | pectinesterase, putative [Ricinus communis] |
RefSeq | XP_002515259.1 | 0 | 25 | 323 | 24 | 341 | pectinesterase, putative [Ricinus communis] |
RefSeq | XP_002529267.1 | 0 | 33 | 323 | 36 | 339 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 3e-37 | 33 | 317 | 5 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-29 | 39 | 317 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.000000005 | 47 | 240 | 44 | 271 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.00000004 | 114 | 240 | 112 | 247 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.00000004 | 114 | 240 | 112 | 247 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |