| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr4g053140.1 |
| Family | GH17 |
| Protein Properties | Length: 302 Molecular Weight: 33892.9 Isoelectric Point: 4.6652 |
| Chromosome | Chromosome/Scaffold: 4 Start: 15717587 End: 15718628 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH17 | 55 | 250 | 0 |
| LDQVITVTTAHSFNILDNSYPPSSGSFRSDLIQYIQPIVEFLDEIKSSFHINAYPFFAYKDNPNEVSLNYALFQPNEGLVDPNTNLHYDNMLYAQIDAVY AAIKVIGYTNVEVKVSETGWPSNGDADEIGATPQNAKLYNGNLLRRIEEKQGTPGKPLVPIDVYVFALFNEDLKPGPASERNYGLYYPDGSPVYNI | |||
| Full Sequence |
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| Protein Sequence Length: 302 Download |
| MLLDICHESS IRISETCGYN XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXLDQVIT 60 VTTAHSFNIL DNSYPPSSGS FRSDLIQYIQ PIVEFLDEIK SSFHINAYPF FAYKDNPNEV 120 SLNYALFQPN EGLVDPNTNL HYDNMLYAQI DAVYAAIKVI GYTNVEVKVS ETGWPSNGDA 180 DEIGATPQNA KLYNGNLLRR IEEKQGTPGK PLVPIDVYVF ALFNEDLKPG PASERNYGLY 240 YPDGSPVYNI GLQGYLPQMV VPSKSNVGMV VDLRSWSVLL SRFQVRFPLV PISMGKSMQS 300 K* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| COG5309 | COG5309 | 1.0e-5 | 149 | 243 | 98 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] |
| pfam00332 | Glyco_hydro_17 | 8.0e-62 | 59 | 250 | 192 | + Glycosyl hydrolases family 17. |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU21124.1 | 0 | 55 | 267 | 158 | 370 | unknown [Glycine max] |
| RefSeq | NP_001031432.1 | 0 | 55 | 301 | 73 | 314 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_565652.1 | 0 | 55 | 301 | 151 | 392 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002328249.1 | 0 | 55 | 276 | 150 | 371 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002523810.1 | 0 | 55 | 281 | 134 | 360 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghs_B | 1.00053e-42 | 59 | 250 | 122 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 1.00053e-42 | 59 | 250 | 122 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 2cyg_A | 6e-40 | 55 | 250 | 121 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_D | 2e-39 | 55 | 250 | 125 | 313 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_C | 2e-39 | 55 | 250 | 125 | 313 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| AM720156 | 220 | 55 | 273 | 0 |
| EG514593 | 226 | 55 | 280 | 0 |
| FS341403 | 216 | 57 | 267 | 0 |
| HO707097 | 191 | 55 | 245 | 0 |
| DR914128 | 219 | 55 | 273 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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