| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr4g064420.1 |
| Family | PL1 |
| Protein Properties | Length: 404 Molecular Weight: 45770.7 Isoelectric Point: 9.5739 |
| Chromosome | Chromosome/Scaffold: 4 Start: 20291106 End: 20293002 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 96 | 294 | 0 |
| ITFKRNMNIKLVRPLLISSFTTIDGRGVDVHIADNACLMIYKATNIIIHGIRVHHCRPQAPGMVMGPDGKIISLGQVDGDAIRLVSASKIWIDHNTLYDC QDGLLDVTRGSTDITISNNWFREQNKVMLLGHDDGFVRDKNMKVTVVYNYFGPNCHQRMPRIRHGYAHVANNMYMGWVQYAIGGSMEPSLKSQSNLFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 404 Download |
| MACHQVNNSV FWCFILLVGI LTFFTTNASS TEKTKIEDKE MNVIDQCWRF NPEWRKHRQQ 60 LDLIHYKVTD PSDHPLNSTP GTLRYGASKI QGKVWITFKR NMNIKLVRPL LISSFTTIDG 120 RGVDVHIADN ACLMIYKATN IIIHGIRVHH CRPQAPGMVM GPDGKIISLG QVDGDAIRLV 180 SASKIWIDHN TLYDCQDGLL DVTRGSTDIT ISNNWFREQN KVMLLGHDDG FVRDKNMKVT 240 VVYNYFGPNC HQRMPRIRHG YAHVANNMYM GWVQYAIGGS MEPSLKSQSN LFIAPVTGKK 300 EVTWRKSSNR IGDTWEFYSV GDAFENGASF METKGGQVTK SNYSPKQNFK VVDAKYIRSL 360 TSSSGVLQCS KTSAQYAELK FVKKICFTLV ILISERLIFT IYL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 9.0e-25 | 112 | 292 | 195 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-52 | 114 | 292 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 8.0e-65 | 101 | 295 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 62 | 373 | 8 | 318 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 41 | 373 | 19 | 367 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 41 | 372 | 1 | 351 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 41 | 373 | 1 | 350 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 11 | 302 | 6 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 42 | 367 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 42 | 367 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.000000000000008 | 91 | 283 | 45 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000001 | 85 | 292 | 102 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 0.00000000000002 | 129 | 366 | 93 | 322 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
