Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr4g076250.1 |
Family | GH17 |
Protein Properties | Length: 371 Molecular Weight: 41557.4 Isoelectric Point: 10.0178 |
Chromosome | Chromosome/Scaffold: 4 Start: 24589338 End: 24593016 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH17 | 197 | 366 | 0 |
IGVCYGMIGNNLPSRQDVVNLYKSRALQALRGSNIELILDVARETLNSLRNANEATNWVNRYVKPYARDVKIKYITVGNEIKPYDSEAQSILPAMQNIQN AISAANLQGQIKVSIAIDMTLIGNSYPPNNGVFTDQAKPYIQPIINFLKNNGAPLLANVYPYFAYINNKT |
Full Sequence |
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Protein Sequence Length: 371 Download |
MYRSWLPAHI VLALVVIGRL AVCYRLIALC SVLTMYYERG GGKSVVSAGA ISNRVAEDRK 60 QAKAVVVIFT TGKTKLQDRI RDTSIQQGFY VDIAILVVNI MRGCEPQTIK LLNLLKTSNK 120 KFTVVDMIPR WKTCPNAPIC KAVMQQDRYV RAEFEIRVIE IIAQFKSQGL NTELYYKNKN 180 KTMGETFNIV PTTVESIGVC YGMIGNNLPS RQDVVNLYKS RALQALRGSN IELILDVARE 240 TLNSLRNANE ATNWVNRYVK PYARDVKIKY ITVGNEIKPY DSEAQSILPA MQNIQNAISA 300 ANLQGQIKVS IAIDMTLIGN SYPPNNGVFT DQAKPYIQPI INFLKNNGAP LLANVYPYFA 360 YINNKTKHFS * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd01887 | IF2_eIF5B | 5.0e-7 | 71 | 192 | 165 | + Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. | ||
TIGR00491 | aIF-2 | 8.0e-9 | 88 | 191 | 108 | + translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; the alignment generated by This model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region [Protein synthesis, Translation factors]. | ||
PRK14845 | PRK14845 | 2.0e-13 | 88 | 193 | 110 | + translation initiation factor IF-2; Provisional | ||
PRK04004 | PRK04004 | 2.0e-18 | 92 | 192 | 105 | + translation initiation factor IF-2; Validated | ||
pfam00332 | Glyco_hydro_17 | 4.0e-69 | 197 | 364 | 182 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC04715.1 | 0 | 198 | 365 | 3 | 183 | beta-1,3-glucanase 11 [Glycine max] |
GenBank | AAR26001.1 | 0 | 192 | 365 | 28 | 214 | endo-1,3-beta-glucanase [Glycine max] |
GenBank | ACJ84235.1 | 0 | 192 | 360 | 18 | 199 | unknown [Medicago truncatula] |
GenBank | ACU20860.1 | 0 | 192 | 365 | 28 | 214 | unknown [Glycine max] |
EMBL | CAA10167.1 | 0 | 192 | 365 | 20 | 205 | glucan endo-1,3-beta-d-glucosidase [Cicer arietinum] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 197 | 367 | 1 | 185 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 197 | 364 | 2 | 186 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 0 | 197 | 364 | 2 | 186 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_B | 0 | 197 | 364 | 2 | 186 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_A | 0 | 197 | 364 | 2 | 186 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |