Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr4g078230.1 |
Family | GH5 |
Protein Properties | Length: 428 Molecular Weight: 49269 Isoelectric Point: 6.4417 |
Chromosome | Chromosome/Scaffold: 4 Start: 25656814 End: 25660001 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 49 | 376 | 2.8e-33 |
DGKAFYINGWNSYWFMVQSVDAYTRPRVGEMLKAGAKMGLTVCRTWAFNDGDYNALQTSPGVFDEQAFKALDYVIAEARRHRIRLLLSLVNNLQAYGGKD QYVQWAWQEGLGLSSSNDSFFYDPSIRSYFKNYVKTILTRKNTITGIEYRHDPIIFGWELINEPRCITDPSGDTLQDWIEEMSTFVKSIDKKHLVTIGLE GFYGPNDPKRLTVNPPEGWASRLGSDFIRNSQTSNIDFTSVHIYPDHWFHKQDFEEYMKFLSKWMLSHIEDGDNVLNKPVLFSEYGLSDSIENFSLSNRE KMYKKILDISHKSAKKNQSGAGALVWQF |
Full Sequence |
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Protein Sequence Length: 428 Download |
MAGNGLFYPI FCFASVVLFI YMSFGVRMDY DEEIELSFVE RKGSQFVLDG KAFYINGWNS 60 YWFMVQSVDA YTRPRVGEML KAGAKMGLTV CRTWAFNDGD YNALQTSPGV FDEQAFKALD 120 YVIAEARRHR IRLLLSLVNN LQAYGGKDQY VQWAWQEGLG LSSSNDSFFY DPSIRSYFKN 180 YVKTILTRKN TITGIEYRHD PIIFGWELIN EPRCITDPSG DTLQDWIEEM STFVKSIDKK 240 HLVTIGLEGF YGPNDPKRLT VNPPEGWASR LGSDFIRNSQ TSNIDFTSVH IYPDHWFHKQ 300 DFEEYMKFLS KWMLSHIEDG DNVLNKPVLF SEYGLSDSIE NFSLSNREKM YKKILDISHK 360 SAKKNQSGAG ALVWQFLVSG MSEFIDDFGM VPWEKPSMYS LFIEHSCRLT KVNKGLTLHN 420 PSFKHVC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00150 | Cellulase | 0.002 | 148 | 354 | 215 | + Cellulase (glycosyl hydrolase family 5). | ||
pfam12876 | Cellulase-like | 0.0005 | 196 | 292 | 106 | + Sugar-binding cellulase-like. This is a putative cellulase family. | ||
COG3934 | COG3934 | 4.0e-32 | 51 | 394 | 347 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95966.1 | 0 | 1 | 427 | 5 | 431 | unknown [Populus trichocarpa] |
GenBank | ACN78665.1 | 0 | 1 | 427 | 14 | 439 | endo-beta-mannanase [Malus x domestica] |
EMBL | CBI21857.1 | 0 | 1 | 427 | 2 | 428 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273772.1 | 0 | 1 | 427 | 7 | 433 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002330687.1 | 0 | 1 | 427 | 5 | 431 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 37 | 413 | 5 | 373 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 42 | 392 | 17 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 42 | 392 | 17 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 42 | 392 | 17 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 42 | 392 | 17 | 358 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |