Basic Information | |
---|---|
Species | Medicago truncatula |
Cazyme ID | Medtr4g081080.1 |
Family | AA3 |
Protein Properties | Length: 607 Molecular Weight: 66494 Isoelectric Point: 7.7398 |
Chromosome | Chromosome/Scaffold: 4 Start: 27196862 End: 27199174 |
Description | fatty alcohol oxidase 3 |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
AA3 | 73 | 598 | 0 |
GLNVTLDSKNNILKIKCDAVVVGSGCGGGVAASVLSKAGYKVVVLEKGNYFVPKDYSSLEGPSMDQQYEKGGMLASVDSRIVLFAGSTVGGGSAVNWSAC IRTPQNVLKEWSDEHKLPLFETLEYLSAMETVCERIGVNENCTQEGFQNQVLRKGCQNLGLKVDYVPRNSPGNHYCGSCGYGCPKGEKQGTQATWLVDAV DKGAVIITGCKAERFLFDNNYKNANTRKKKKCLGVLAKTLNSRVTMKLQIEAKVTISAGGAILTPPLLISSGLKNKNIGRNLHLHPVLMTWGYFPESKSD LKGKIYEGGIITSVHKVSSSLNDHSISDTRAIIETPLLGPSSFASIYPWESGLDFKQRMLKYPRTAHLITIIRDKASGQVKTEGRISYKLNSIDRENMRA GLQQGLRILIAAGAVEVGTHRSDGQRIKCNENTGEKEIEEFIDSVYPMEGALWPGENWNLYTSAHQMGSCRMGVNEKEGAVDENGESWEAEGLFVCDASV LPTAVGVNPMITIQSTAFCISNRIVD |
Full Sequence |
---|
Protein Sequence Length: 607 Download |
MSLCFLLLGI YYFFNLAVDE NGDNPAWKAI GYEVSTADEK MINDTKKRPL EKGIIEIMHE 60 HDTTLQQSLS NKGLNVTLDS KNNILKIKCD AVVVGSGCGG GVAASVLSKA GYKVVVLEKG 120 NYFVPKDYSS LEGPSMDQQY EKGGMLASVD SRIVLFAGST VGGGSAVNWS ACIRTPQNVL 180 KEWSDEHKLP LFETLEYLSA METVCERIGV NENCTQEGFQ NQVLRKGCQN LGLKVDYVPR 240 NSPGNHYCGS CGYGCPKGEK QGTQATWLVD AVDKGAVIIT GCKAERFLFD NNYKNANTRK 300 KKKCLGVLAK TLNSRVTMKL QIEAKVTISA GGAILTPPLL ISSGLKNKNI GRNLHLHPVL 360 MTWGYFPESK SDLKGKIYEG GIITSVHKVS SSLNDHSISD TRAIIETPLL GPSSFASIYP 420 WESGLDFKQR MLKYPRTAHL ITIIRDKASG QVKTEGRISY KLNSIDRENM RAGLQQGLRI 480 LIAAGAVEVG THRSDGQRIK CNENTGEKEI EEFIDSVYPM EGALWPGENW NLYTSAHQMG 540 SCRMGVNEKE GAVDENGESW EAEGLFVCDA SVLPTAVGVN PMITIQSTAF CISNRIVDFL 600 RKRQEP* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR01810 | betA | 0.001 | 534 | 604 | 72 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
TIGR03970 | Rv0697 | 9.0e-6 | 158 | 601 | 477 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
pfam05199 | GMC_oxred_C | 2.0e-22 | 457 | 589 | 133 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
COG2303 | BetA | 4.0e-31 | 110 | 606 | 551 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
pfam00732 | GMC_oxred_N | 2.0e-89 | 136 | 359 | 227 | + GMC oxidoreductase. This family of proteins bind FAD as a cofactor. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0009055 | electron carrier activity |
GO:0016491 | oxidoreductase activity |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN71289.1 | 0 | 7 | 605 | 152 | 740 | hypothetical protein [Vitis vinifera] |
EMBL | CAP15762.1 | 0 | 7 | 604 | 157 | 748 | long chain fatty alcohol oxidase FAO1 [Lotus japonicus] |
RefSeq | XP_002311685.1 | 0 | 7 | 602 | 158 | 743 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314488.1 | 0 | 7 | 600 | 130 | 713 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002528823.1 | 0 | 10 | 604 | 158 | 746 | disulfide oxidoreductase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ljp_B | 0.000007 | 208 | 601 | 168 | 527 | A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant |
PDB | 3ljp_A | 0.000007 | 208 | 601 | 168 | 527 | A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant |
PDB | 3nne_H | 0.00002 | 208 | 601 | 168 | 527 | A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant |
PDB | 3nne_G | 0.00002 | 208 | 601 | 168 | 527 | A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant |
PDB | 3nne_F | 0.00002 | 208 | 601 | 168 | 527 | A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant |