Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr4g083660.1 |
Family | GH28 |
Protein Properties | Length: 449 Molecular Weight: 48023.8 Isoelectric Point: 9.1818 |
Chromosome | Chromosome/Scaffold: 4 Start: 28606147 End: 28608982 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 34 | 360 | 0 |
KACSSPYPASIYVPQGKFLLGTATFSGKCINKAISITIDGTLVASSNYRVTGKNGNWLKFQHVDGVSIRGGLLDGQGTALWDCKNSDKSNCPIGATTLEF SNSKNIMISGLTSMNSQMFHIVFNGCENVKMQGVNIMAAGNSPNTDGIHVQMSSHVTIVNSKIRTGDDCISIGPGTSNLWIENIACGPGHGISIGSLGWK LNEPGVQNVTVKTVTFTGTQNGVRIKSWGRPSNGFVRNIFFQDAIMVNVQNPIVIDQNYCPNNKGCPGQASGIKVSGVTYQNIHGTSATQVAVKFDCSSK YPCSGIKMKDVKLTYKNQVAEASCNHA |
Full Sequence |
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Protein Sequence Length: 449 Download |
MSASSSSTYN VINYGAKPDG KTDSTKAFGN VWAKACSSPY PASIYVPQGK FLLGTATFSG 60 KCINKAISIT IDGTLVASSN YRVTGKNGNW LKFQHVDGVS IRGGLLDGQG TALWDCKNSD 120 KSNCPIGATT LEFSNSKNIM ISGLTSMNSQ MFHIVFNGCE NVKMQGVNIM AAGNSPNTDG 180 IHVQMSSHVT IVNSKIRTGD DCISIGPGTS NLWIENIACG PGHGISIGSL GWKLNEPGVQ 240 NVTVKTVTFT GTQNGVRIKS WGRPSNGFVR NIFFQDAIMV NVQNPIVIDQ NYCPNNKGCP 300 GQASGIKVSG VTYQNIHGTS ATQVAVKFDC SSKYPCSGIK MKDVKLTYKN QVAEASCNHA 360 GGAALGSVQP ESLFGSIWKN PARLKVIGFS WKALHDSIPS KYNLRIRDVL PIESSVFCEW 420 CGDAVETTVH ILLHCGLAKG VWSKVMRW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 8.0e-90 | 2 | 371 | 376 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 5.0e-92 | 36 | 360 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-92 | 4 | 376 | 380 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-103 | 4 | 370 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-140 | 1 | 372 | 373 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 8 | 374 | 27 | 393 | endopolygalacturonase [Prunus persica] |
DDBJ | BAC22689.1 | 0 | 4 | 374 | 29 | 398 | polygalacturonase [Pyrus communis] |
DDBJ | BAF42034.1 | 0 | 4 | 374 | 29 | 398 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 4 | 374 | 29 | 398 | polygalacturonase [Pyrus communis] |
RefSeq | XP_002529090.1 | 0 | 2 | 372 | 22 | 391 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-20 | 104 | 347 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 1e-17 | 54 | 359 | 49 | 342 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1rmg_A | 8e-16 | 5 | 346 | 17 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_B | 0.0000000000001 | 106 | 319 | 84 | 294 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_A | 0.0000000000001 | 106 | 319 | 84 | 294 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JZ191937 | 300 | 75 | 374 | 0 |
DY281549 | 316 | 8 | 323 | 0 |
JZ194028 | 287 | 71 | 357 | 0 |
JZ192826 | 287 | 73 | 359 | 0 |
JZ192324 | 276 | 76 | 351 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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