Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr4g084050.1 |
Family | GH28 |
Protein Properties | Length: 395 Molecular Weight: 42644.1 Isoelectric Point: 5.0384 |
Chromosome | Chromosome/Scaffold: 4 Start: 28822865 End: 28824772 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 50 | 384 | 0 |
CGSTRDTPTLIIPEGQNFMLQPLSFQGPCKSTTISVKIMGTITAPQSNANWKWDDNDGDYWIKFSNINGLIINGGGTVDGQGDSWWNNNGHIRPTALKIL ECDNLKLGPLKHINSPRNHISIVGCNDALISNLHIIAPKDSPNTDGIDISTSTNISVQHSIISTGDDCIAINNGTEFIYITDIQCGPGHGISVGSLGKDG DYSTVEEIHVSNITFRETTNGARIKTWTGGSGYARKITYEDIIVFKVENPVIIDQQYDALEPLKTKYNVLEGVSKAVKVSDVIFRNIRGTTNGKDAIDLN CARIGCTNIILEDIDIVDLDGKKASASCNSVQGSC |
Full Sequence |
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Protein Sequence Length: 395 Download |
MKGLFVLCLI FVIASPCLCQ NYFNVVKYGA KGDGHTDDSN AFTNAWQDVC GSTRDTPTLI 60 IPEGQNFMLQ PLSFQGPCKS TTISVKIMGT ITAPQSNANW KWDDNDGDYW IKFSNINGLI 120 INGGGTVDGQ GDSWWNNNGH IRPTALKILE CDNLKLGPLK HINSPRNHIS IVGCNDALIS 180 NLHIIAPKDS PNTDGIDIST STNISVQHSI ISTGDDCIAI NNGTEFIYIT DIQCGPGHGI 240 SVGSLGKDGD YSTVEEIHVS NITFRETTNG ARIKTWTGGS GYARKITYED IIVFKVENPV 300 IIDQQYDALE PLKTKYNVLE GVSKAVKVSD VIFRNIRGTT NGKDAIDLNC ARIGCTNIIL 360 EDIDIVDLDG KKASASCNSV QGSCSSCNPQ VSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-77 | 24 | 352 | 339 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 1.0e-79 | 4 | 381 | 397 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 9.0e-85 | 23 | 385 | 373 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 4.0e-110 | 21 | 394 | 378 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 4.0e-112 | 20 | 394 | 377 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 1 | 394 | 1 | 396 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 1 | 394 | 1 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | NP_566524.1 | 0 | 21 | 394 | 22 | 389 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 1 | 394 | 1 | 394 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 1 | 394 | 5 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 4e-23 | 89 | 387 | 42 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-23 | 89 | 387 | 42 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-23 | 89 | 387 | 42 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 4e-23 | 89 | 387 | 42 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 4e-23 | 89 | 387 | 42 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |