Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr4g107870.1 |
Family | PL1 |
Protein Properties | Length: 446 Molecular Weight: 49449.3 Isoelectric Point: 9.3403 |
Chromosome | Chromosome/Scaffold: 4 Start: 37098696 End: 37100254 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 157 | 366 | 0 |
IIFKHNMNIKLKAELLLTSDKTIDARGANVHISEGAQITLQYVKNIIIHGLHIHDTKKTSGGQIRDSMDHYGSRSASDGDAISMFGASHVWIDHISMWNC ADGLVDAVAGSTAITISNCHMTRHNDVINNISSTYSFVMLFGANDGFSGDQISQITVAFNHFGKGLIQRMPRCRWGFFHIVNNDYTHWLMYAIGGSTHPT ILSQGNRFIA |
Full Sequence |
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Protein Sequence Length: 446 Download |
MEVNKRRLLF GCVFFLAIVP IFEANIVHFD QYWQNRSDDA KKAAQQAYKP NPQEITSNLN 60 MHVHKALSGS NSTRRELAKY KGPCSATNPI DSCWRCDPNW EKNRKKLADC VLGFGHGTTG 120 GKAGKIYVVT DSSDNDLVTP KPGTLRFAAI QKEPLWIIFK HNMNIKLKAE LLLTSDKTID 180 ARGANVHISE GAQITLQYVK NIIIHGLHIH DTKKTSGGQI RDSMDHYGSR SASDGDAISM 240 FGASHVWIDH ISMWNCADGL VDAVAGSTAI TISNCHMTRH NDVINNISST YSFVMLFGAN 300 DGFSGDQISQ ITVAFNHFGK GLIQRMPRCR WGFFHIVNND YTHWLMYAIG GSTHPTILSQ 360 GNRFIAPPNP NAKEVTKRDY APESVWKAWS WRSENDLMMN GAFFKQSGTK AANFPKSDIK 420 AKPGSFAAAL TRFSGCLKCE VGKPC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 3.0e-11 | 25 | 77 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 7.0e-20 | 175 | 364 | 202 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-57 | 168 | 364 | 219 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-66 | 162 | 368 | 218 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 17 | 445 | 19 | 439 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 17 | 445 | 19 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 13 | 445 | 3 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330086.1 | 0 | 1 | 445 | 1 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 15 | 445 | 17 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 88 | 437 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 88 | 437 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-16 | 116 | 355 | 19 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 0.000000003 | 166 | 364 | 71 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1jta_A | 0.00000001 | 242 | 364 | 151 | 287 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |