| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr4g115530.2 |
| Family | GT47 |
| Protein Properties | Length: 230 Molecular Weight: 26485.9 Isoelectric Point: 10.1253 |
| Chromosome | Chromosome/Scaffold: 4 Start: 39934184 End: 39934873 |
| Description | xylogalacturonan deficient 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT47 | 6 | 174 | 0 |
| RVSYANPKLFKHFIRALCNANTSEGFWPNRDVSIPQLNLPVGKLGPPNTDQHPNNRTILTFFAGGAHGKIRKKLLKSWKDKDEEVQVHEYLPKGQDYTKL MGLSKFCLCPSGHEVASPRVVEAIYAGCVPVIICDNYSLPFSDVLNWSQFSMEIAVDRIPEIKTILQNI | |||
| Full Sequence |
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| Protein Sequence Length: 230 Download |
| MIQGPRVSYA NPKLFKHFIR ALCNANTSEG FWPNRDVSIP QLNLPVGKLG PPNTDQHPNN 60 RTILTFFAGG AHGKIRKKLL KSWKDKDEEV QVHEYLPKGQ DYTKLMGLSK FCLCPSGHEV 120 ASPRVVEAIY AGCVPVIICD NYSLPFSDVL NWSQFSMEIA VDRIPEIKTI LQNITETKYR 180 VLYSNVRRVR KHFEMNRPAK PFDLIHMILH SVWLRRLNFR LHLKQMYPS* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03016 | Exostosin | 5.0e-44 | 4 | 174 | 182 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABP03872.1 | 0 | 4 | 229 | 248 | 473 | Exostosin-like [Medicago truncatula] |
| GenBank | ABP03873.1 | 0 | 4 | 221 | 396 | 613 | Exostosin-like [Medicago truncatula] |
| EMBL | CAN76361.1 | 0 | 4 | 221 | 240 | 457 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI25537.1 | 0 | 4 | 221 | 258 | 475 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002263848.1 | 0 | 4 | 221 | 177 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| CO980396 | 208 | 14 | 221 | 0 |
| CO983212 | 219 | 4 | 221 | 0 |
| FG997014 | 175 | 47 | 221 | 0 |
| BE821177 | 187 | 35 | 221 | 0 |
| EV275619 | 187 | 35 | 221 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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