Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr4g120730.1 |
Family | GH28 |
Protein Properties | Length: 460 Molecular Weight: 49832.3 Isoelectric Point: 5.8181 |
Chromosome | Chromosome/Scaffold: 4 Start: 41724435 End: 41728323 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 71 | 417 | 0 |
DKGGAQLYVPPGTWLTQSFNLTSHLTLFLEKGAVIIGSQDHYNWDVLDPLPSYGRGLEVPGGRYQSLINGYMLQDVVITGNNGTIDGMGSTWWESFSSHS LNYSRPHLVELVASTDVVVSNLTFLNAPAYNIHPVYCRNVHIHNISIFAPPESPYTVGIVPDSSDHVCIEDCTIATGYDAIALKSGWDEYGIAYGRPTEN VHIRRVHLQASYGSTLAFGSDMSGGISNVFVEHVHLYNSKGGIEFRTIRGRGGYMKDIILSDIEMKNIYRAISATGYCGSHPDDKFDPNALPLLDHFIFQ DIIGTNITIAGSFAGLQESPFTNICLSNITLSVNYASSTSWECSNVS |
Full Sequence |
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Protein Sequence Length: 460 Download |
MLVALVLLLL ALSNEVRVNG ERGDRQCGFN PSLKPRPHSV SILEFGAVGD GKTLNTIAFQ 60 NAIFYLKSFA DKGGAQLYVP PGTWLTQSFN LTSHLTLFLE KGAVIIGSQD HYNWDVLDPL 120 PSYGRGLEVP GGRYQSLING YMLQDVVITG NNGTIDGMGS TWWESFSSHS LNYSRPHLVE 180 LVASTDVVVS NLTFLNAPAY NIHPVYCRNV HIHNISIFAP PESPYTVGIV PDSSDHVCIE 240 DCTIATGYDA IALKSGWDEY GIAYGRPTEN VHIRRVHLQA SYGSTLAFGS DMSGGISNVF 300 VEHVHLYNSK GGIEFRTIRG RGGYMKDIIL SDIEMKNIYR AISATGYCGS HPDDKFDPNA 360 LPLLDHFIFQ DIIGTNITIA GSFAGLQESP FTNICLSNIT LSVNYASSTS WECSNVSGFS 420 DSVLPIPCPD LDSPSNYSSS CLSKLSMKGK IAGSGSVSM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 6.0e-21 | 32 | 428 | 421 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-26 | 138 | 416 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 7.0e-27 | 38 | 425 | 400 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 6.0e-27 | 37 | 410 | 388 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 4.0e-48 | 40 | 379 | 375 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 13 | 429 | 12 | 428 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 13 | 429 | 14 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 16 | 433 | 15 | 431 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328589.1 | 0 | 16 | 450 | 17 | 446 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516982.1 | 0 | 13 | 445 | 12 | 443 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 3e-33 | 38 | 402 | 26 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 3e-33 | 38 | 402 | 26 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 3e-33 | 38 | 402 | 26 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 3e-33 | 38 | 402 | 26 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000001 | 153 | 417 | 117 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |