Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr4g124740.1 |
Family | CE8 |
Protein Properties | Length: 346 Molecular Weight: 38924.2 Isoelectric Point: 8.8338 |
Chromosome | Chromosome/Scaffold: 4 Start: 43609624 End: 43611131 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 54 | 334 | 0 |
VRVRKDGTGDFTTVTDAVKSIPSGNKRRVVVWIGMGEYREKITVDRSKRFVTFYGERNGKDNDMMPIITYDATALRYGTLDSATVAVDADYFVAVNVAFV NSSPMPDENSVGGQALAMRISGDKAAFYNCKFIGFQDTLCDDYGKHFFKDCFIQGTYDFIFGNGKSIYLNRLQRGLNVITAQGRERMSDDTGFTFVHCNI TGSGHRNTYLGRGWRRSPRVVFAYTYMDSVVNSRGWYHHGSNETIFFGEYKCSGPGAVRLNYKRILSDEEAKHFLSMAYIH |
Full Sequence |
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Protein Sequence Length: 346 Download |
MSQVETGAKL LATLALALFH LLPVTPTLSE FNRHREITLL EEHLTAAETT VRVVRVRKDG 60 TGDFTTVTDA VKSIPSGNKR RVVVWIGMGE YREKITVDRS KRFVTFYGER NGKDNDMMPI 120 ITYDATALRY GTLDSATVAV DADYFVAVNV AFVNSSPMPD ENSVGGQALA MRISGDKAAF 180 YNCKFIGFQD TLCDDYGKHF FKDCFIQGTY DFIFGNGKSI YLNRLQRGLN VITAQGRERM 240 SDDTGFTFVH CNITGSGHRN TYLGRGWRRS PRVVFAYTYM DSVVNSRGWY HHGSNETIFF 300 GEYKCSGPGA VRLNYKRILS DEEAKHFLSM AYIHGEQWVR PPPKL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 8.0e-79 | 60 | 341 | 299 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 5.0e-80 | 60 | 340 | 291 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 1.0e-87 | 58 | 341 | 302 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-106 | 58 | 341 | 301 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 3.0e-169 | 38 | 345 | 319 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB09012.1 | 0 | 44 | 345 | 59 | 364 | pectin methylesterase-like protein [Arabidopsis thaliana] |
EMBL | CBI27759.1 | 0 | 40 | 343 | 82 | 388 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002277518.1 | 0 | 40 | 343 | 70 | 376 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002326144.1 | 0 | 39 | 345 | 64 | 374 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516214.1 | 0 | 39 | 345 | 66 | 378 | Pectinesterase-3 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1.00053e-42 | 54 | 340 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-34 | 56 | 340 | 7 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 5e-16 | 64 | 327 | 18 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 5e-16 | 64 | 327 | 18 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 5e-16 | 64 | 327 | 18 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |