Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr4g124980.1 |
Family | GH28 |
Protein Properties | Length: 564 Molecular Weight: 63917.3 Isoelectric Point: 8.4289 |
Chromosome | Chromosome/Scaffold: 4 Start: 43742680 End: 43746761 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 234 | 525 | 0 |
RPGPRYGSLIHGQNLKDVVITGHNGTINGQGQAWWKKFRQKRLNYTRGPLLQIMWSSDIVITDITLRDSPFWTLHPYDCKNLTIKGVTILAPVFEAPNTD GIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNIMIRNLVVRSMVSAGISIGSEMSGGISNVTVENLLVWDSRRGVRIKTAPGRGGYVRQ ITYRNITFENVRVGIVMKTDYNEHPDDGYDPTALPVIRDISFTNVYGHGVRVPVRIHGSEEIPVRNVTFRDMSVGLTYKKKHIFQCAFVHGR |
Full Sequence |
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Protein Sequence Length: 564 Download |
MVETSTLGRF HHQRLDFKRC VPAFITSHKT LFMVLWIAAF LSVFIWQRNM VVGGFMVFGR 60 VPVRPIPNMR PVVFNLTDFG GVGDGVTLNT EAFERAVSAI SKFGKKGGAQ LNVPPGRWLT 120 APFNLTSHIT LFLAQDAVIL AIDRENWGST YRKIDGRNSA QVWFWYVERR LVYYVVSSVD 180 PMEIGQITRE IQELDRDMIY DTTLWRCLIH IADPDEKYWP LMPPLPSYGY GRERPGPRYG 240 SLIHGQNLKD VVITGHNGTI NGQGQAWWKK FRQKRLNYTR GPLLQIMWSS DIVITDITLR 300 DSPFWTLHPY DCKNLTIKGV TILAPVFEAP NTDGIDPDSC EDMLIEDCYI SVGDDAIAIK 360 SGWDQYGIAY GRPSMNIMIR NLVVRSMVSA GISIGSEMSG GISNVTVENL LVWDSRRGVR 420 IKTAPGRGGY VRQITYRNIT FENVRVGIVM KTDYNEHPDD GYDPTALPVI RDISFTNVYG 480 HGVRVPVRIH GSEEIPVRNV TFRDMSVGLT YKKKHIFQCA FVHGRVIGTI FPSPCENLDR 540 YNEQGQLVKH SMSQNVTDID YDF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-21 | 244 | 535 | 301 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-26 | 247 | 507 | 267 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-35 | 243 | 514 | 276 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-51 | 73 | 499 | 452 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF82228.1 | 0 | 9 | 562 | 11 | 532 | AC069143_4 Contains similarity to a polygalacturonase-like protein gi |
GenBank | EAY87758.1 | 0 | 1 | 551 | 1 | 506 | hypothetical protein OsI_09176 [Oryza sativa Indica Group] |
RefSeq | XP_002326133.1 | 0 | 215 | 563 | 147 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 1 | 147 | 2 | 149 | polygalacturonase, putative [Ricinus communis] |
RefSeq | XP_002516244.1 | 0 | 215 | 563 | 146 | 494 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 4.06377e-44 | 75 | 504 | 29 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 4.06377e-44 | 75 | 504 | 29 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 4.06377e-44 | 75 | 504 | 29 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 4.06377e-44 | 75 | 504 | 29 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 2e-16 | 32 | 488 | 115 | 542 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |