| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr4g129180.1 |
| Family | GH33 |
| Protein Properties | Length: 355 Molecular Weight: 39620.8 Isoelectric Point: 5.2462 |
| Chromosome | Chromosome/Scaffold: 4 Start: 45251843 End: 45255603 |
| Description | BNR/Asp-box repeat family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH33 | 51 | 343 | 8e-31 |
| LEGSAPFNNCHASTIVEFDKDHFLVAYFGGTSEGAPDVKIWLQTCKNGRWESPVIADEQPNVPMWNPVLFKLPSDELLLFYKIGQEVQKWSGFVKRSYDK GNTWTEREQLPPGILGPIKNKPILLENGHLICGSSVESWNSWGAWVEVTSDFGRSWSKHGPIYIENEPLSVIQPVPYQTADGKLRVLLRSFDGIGRVCIS ESSDGGQTWGHAKPTQLPNPNSGIDGVKLRDGRILLVYNTTSRGILKVALSNDDGDSWYEALTLEDSSGMEFSYPAVIQASDGLIHITYTYKR | |||
| Full Sequence |
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| Protein Sequence Length: 355 Download |
| MFVSLTRQSK SPDPSETEPP YFAIPCGDCL TFRMENRCPI YGPLTEELTF LEGSAPFNNC 60 HASTIVEFDK DHFLVAYFGG TSEGAPDVKI WLQTCKNGRW ESPVIADEQP NVPMWNPVLF 120 KLPSDELLLF YKIGQEVQKW SGFVKRSYDK GNTWTEREQL PPGILGPIKN KPILLENGHL 180 ICGSSVESWN SWGAWVEVTS DFGRSWSKHG PIYIENEPLS VIQPVPYQTA DGKLRVLLRS 240 FDGIGRVCIS ESSDGGQTWG HAKPTQLPNP NSGIDGVKLR DGRILLVYNT TSRGILKVAL 300 SNDDGDSWYE ALTLEDSSGM EFSYPAVIQA SDGLIHITYT YKRTQIKHVT LRPN* 360 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00260 | Sialidase | 0.006 | 144 | 312 | 202 | + Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. | ||
| COG4692 | COG4692 | 3.0e-30 | 56 | 353 | 357 | + Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism] | ||
| pfam13088 | BNR_2 | 5.0e-99 | 71 | 337 | 282 | + BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU18568.1 | 0 | 34 | 354 | 34 | 354 | unknown [Glycine max] |
| RefSeq | NP_851204.1 | 0 | 44 | 352 | 14 | 322 | BNR/Asp-box repeat family protein [Arabidopsis thaliana] |
| RefSeq | XP_002263578.1 | 0 | 40 | 354 | 55 | 369 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324495.1 | 0 | 34 | 354 | 1 | 321 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002531744.1 | 0 | 34 | 354 | 1 | 321 | conserved hypothetical protein [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EL689016 | 286 | 53 | 338 | 0 |
| FG812628 | 244 | 34 | 277 | 0 |
| DV137355 | 268 | 73 | 340 | 0 |
| ES962106 | 261 | 65 | 325 | 0 |
| EY114510 | 258 | 43 | 300 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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