y
Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr5g010370.1 |
Family | GT47 |
Protein Properties | Length: 548 Molecular Weight: 63469.3 Isoelectric Point: 7.6927 |
Chromosome | Chromosome/Scaffold: 5 Start: 2520816 End: 2522459 |
Description | root hair specific 8 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 164 | 488 | 0 |
GIYVYDLPSKFNKDLVGQCSDMLPWQDFCRYISNEGFGEPISKLGKGWYKTHQYSLELIFHSKVLKHPCRVYNENDAKLFYVPFYGGLDVLRWHFQNVSN DVKDSLSLELVKWLERQVNWKRNLGKDHVFVLGKISWDFRRTSDSPWGTRLLELEKLQNPIKLLIERQPWHVNDIGIPHPTYFHPKSDNDIIDWQLKIIR SNRRNLVSFAGAARDHADDHIRSILINQCSSESDGKCKFLNCSSAKCNEPESIIELFVESEFCLQPPGDSPTRKSVFDSLISGCIPVLFDPFTAYYQYAW HLPEDYDKYSVFMDKKEVREMNVNV |
Full Sequence |
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Protein Sequence Length: 548 Download |
MAVSLSKKRS KFSRKLEPKQ SCFAFTILYS FIRRISALIF LLILIYIWSS FSTIITGNII 60 HVCFSTRKLN DNFYCVSAAT HTNPSFDIPT YSINNNTVST SIITTTEKIE VSNNVTQELG 120 NLSIGTPYNE EVANAVKIIE EHLKVHRSWR SENKNNATCD DGKGIYVYDL PSKFNKDLVG 180 QCSDMLPWQD FCRYISNEGF GEPISKLGKG WYKTHQYSLE LIFHSKVLKH PCRVYNENDA 240 KLFYVPFYGG LDVLRWHFQN VSNDVKDSLS LELVKWLERQ VNWKRNLGKD HVFVLGKISW 300 DFRRTSDSPW GTRLLELEKL QNPIKLLIER QPWHVNDIGI PHPTYFHPKS DNDIIDWQLK 360 IIRSNRRNLV SFAGAARDHA DDHIRSILIN QCSSESDGKC KFLNCSSAKC NEPESIIELF 420 VESEFCLQPP GDSPTRKSVF DSLISGCIPV LFDPFTAYYQ YAWHLPEDYD KYSVFMDKKE 480 VREMNVNVVE RLGNISLRDR ENMRRYIVYE LLPGLVYGDH NAEFDKFQDA FAIAMNNLIE 540 RVNRFKD* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 4.0e-63 | 161 | 479 | 334 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI34680.1 | 0 | 1 | 545 | 456 | 992 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_176534.2 | 0 | 130 | 544 | 247 | 662 | catalytic [Arabidopsis thaliana] |
RefSeq | XP_002269913.1 | 0 | 1 | 545 | 1 | 537 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299537.1 | 0 | 1 | 546 | 1 | 573 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509789.1 | 0 | 1 | 546 | 1 | 567 | Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis] |