Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr5g012600.1 |
Family | CE8 |
Protein Properties | Length: 365 Molecular Weight: 40576.8 Isoelectric Point: 7.8444 |
Chromosome | Chromosome/Scaffold: 5 Start: 3571613 End: 3573960 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 63 | 354 | 0 |
ITVDINGGGQFQSVQDAVNSVPDNNTMNVLIQISAGFYKEKVVVPVTKPYITFQGEGREVTVIEWHDRACDPGPNGQQLRTYRTASVTVFANYFSAKNIT FKNTAPAPMPGMQGLQAVAFRISGDKAYFSGCGFHGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRQYLDEKTGFT FVRCKVTGSGPLYVGRAMGQYSRIVYAYTYFDDIVAHGGWDDWDHTNNKNKTVFFGVYKCWGPGAEAVRGVSWARELDFETAHPFIRKSFVN |
Full Sequence |
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Protein Sequence Length: 365 Download |
MDTPTLLHSL QLLLVFTCML LNAGIVTLAA RLHHHHHHTT FNTLSTTNSS KNHWIGPVGN 60 RVITVDINGG GQFQSVQDAV NSVPDNNTMN VLIQISAGFY KEKVVVPVTK PYITFQGEGR 120 EVTVIEWHDR ACDPGPNGQQ LRTYRTASVT VFANYFSAKN ITFKNTAPAP MPGMQGLQAV 180 AFRISGDKAY FSGCGFHGAQ DTLCDDAGRH YFKECYIEGS IDFIFGNGRS MYKDCELHSI 240 ATRFGSIAAQ DRQYLDEKTG FTFVRCKVTG SGPLYVGRAM GQYSRIVYAY TYFDDIVAHG 300 GWDDWDHTNN KNKTVFFGVY KCWGPGAEAV RGVSWARELD FETAHPFIRK SFVNGRHWIA 360 PTDA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 1.0e-104 | 62 | 364 | 312 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 8.0e-106 | 61 | 361 | 303 | + pectinesterase family protein | ||
PLN02671 | PLN02671 | 2.0e-115 | 59 | 359 | 303 | + pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-141 | 61 | 361 | 302 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 0 | 54 | 364 | 311 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD64977.1 | 0 | 12 | 364 | 19 | 360 | pectinesterase family protein [Brassica oleracea] |
EMBL | CBI31927.1 | 0 | 44 | 364 | 27 | 349 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_199561.1 | 0 | 9 | 364 | 15 | 362 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002266321.1 | 0 | 44 | 364 | 34 | 356 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002303355.1 | 0 | 50 | 361 | 1 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 4.00001e-41 | 55 | 362 | 5 | 311 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 7e-35 | 58 | 362 | 2 | 307 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 3e-21 | 60 | 239 | 5 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 3e-21 | 60 | 239 | 5 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 4e-21 | 60 | 239 | 5 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |