| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr5g013620.1 |
| Family | GH14 |
| Protein Properties | Length: 544 Molecular Weight: 60779.1 Isoelectric Point: 7.049 |
| Chromosome | Chromosome/Scaffold: 5 Start: 4105840 End: 4108565 |
| Description | chloroplast beta-amylase |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 92 | 500 | 0 |
| FVMLPLDTVTMGGKLNKARAMNASLMALKSAGVEGVMVDAWWGLVEKDGPMKYNWEAYAELVQMVQKHGLKLQIVMSFHQCGGNVGDSCSIPLPPWVLEE IRKNPELVYTDKLGRRNPEYISLGCDSVPVLAGRTPLQVYSDYMRSFRDRFTDYLGNVIIEIQVGLGPCGELRYPSYPETDGTWKFPGIGEFQCYDKYMR SSLEATAGAIGKKEWGTSGPHDSGQYNQFPEDTGFFKREGTWNTEYGDFFLDWYSSKLVEHGEKILVSAKSIFQTSGVKLSAKIAGIHWHYNARSHATEL TAGYYNTKFHDGYIPIAQMLAKHGVILNFTCMEMKDNEQPCDANCSPEGLVNQVRMATKIAGGELAGENALERYDSSAYGQVLSTSGLSAFTYLRINKRL LEGDNWRKF | |||
| Full Sequence |
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| Protein Sequence Length: 544 Download |
| MAQTLRFSIS LINQKETRVL KSLDDFFSNK VSCPKMKPSI GHKLKAKSSI QETHFTTDNN 60 NSAVKKDKKW EKIHTSSVTH NHDGDSNRVP VFVMLPLDTV TMGGKLNKAR AMNASLMALK 120 SAGVEGVMVD AWWGLVEKDG PMKYNWEAYA ELVQMVQKHG LKLQIVMSFH QCGGNVGDSC 180 SIPLPPWVLE EIRKNPELVY TDKLGRRNPE YISLGCDSVP VLAGRTPLQV YSDYMRSFRD 240 RFTDYLGNVI IEIQVGLGPC GELRYPSYPE TDGTWKFPGI GEFQCYDKYM RSSLEATAGA 300 IGKKEWGTSG PHDSGQYNQF PEDTGFFKRE GTWNTEYGDF FLDWYSSKLV EHGEKILVSA 360 KSIFQTSGVK LSAKIAGIHW HYNARSHATE LTAGYYNTKF HDGYIPIAQM LAKHGVILNF 420 TCMEMKDNEQ PCDANCSPEG LVNQVRMATK IAGGELAGEN ALERYDSSAY GQVLSTSGLS 480 AFTYLRINKR LLEGDNWRKF VDFVVSMSDG GKLRLAESDS YGTDLYVGHI IKENDVIIEV 540 ALV* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02905 | PLN02905 | 4.0e-143 | 89 | 507 | 432 | + beta-amylase | ||
| pfam01373 | Glyco_hydro_14 | 3.0e-169 | 92 | 503 | 426 | + Glycosyl hydrolase family 14. This family are beta amylases. | ||
| PLN02803 | PLN02803 | 0 | 1 | 543 | 553 | + beta-amylase | ||
| PLN00197 | PLN00197 | 0 | 34 | 510 | 489 | + beta-amylase; Provisional | ||
| PLN02801 | PLN02801 | 0 | 87 | 507 | 435 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAI39244.1 | 0 | 1 | 530 | 1 | 526 | beta-amylase [Glycine max] |
| EMBL | CAN62440.1 | 0 | 1 | 543 | 1 | 543 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282871.1 | 0 | 1 | 543 | 1 | 543 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002326690.1 | 0 | 1 | 530 | 1 | 533 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002329547.1 | 0 | 1 | 543 | 1 | 548 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1wdp_A | 0 | 87 | 507 | 10 | 441 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1q6c_A | 0 | 87 | 507 | 10 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1bfn_A | 0 | 87 | 507 | 10 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1uko_D | 0 | 87 | 507 | 10 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1uko_C | 0 | 87 | 507 | 10 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO794833 | 411 | 127 | 530 | 0 |
| HO781538 | 407 | 31 | 436 | 0 |
| BU103692 | 446 | 89 | 530 | 0 |
| HO825836 | 376 | 163 | 531 | 0 |
| DV161367 | 302 | 123 | 424 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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