| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr5g019090.1 |
| Family | PL1 |
| Protein Properties | Length: 392 Molecular Weight: 44125 Isoelectric Point: 10.3032 |
| Chromosome | Chromosome/Scaffold: 5 Start: 6940087 End: 6941809 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 111 | 310 | 0 |
| WITFKKDMDIKLMKPLLISSFTTIDGRGVNVHVADNACLMISKVTNIIIHNIRIHHCKAQTPGMVMGPNGKVIHLGQVDGDAIRLVTASKIWIDHNTLYD CEDGLLDVTRGSTNVTVSNNWFREQDKVMLLGHDDGYVRDINMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWMQYAIGGSMGPSLKSESNLFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 392 Download |
| MVYKSPNIIR WNFVLAIVIT IFFTSKFSFA KQSKLMGLKM NMIDRCWRPN PEWRKHRQQL 60 VTCSIGYAGK MTNNIGKGLT HYKVTNPNDD PINPQRGTLR YGASVIQGKV WITFKKDMDI 120 KLMKPLLISS FTTIDGRGVN VHVADNACLM ISKVTNIIIH NIRIHHCKAQ TPGMVMGPNG 180 KVIHLGQVDG DAIRLVTASK IWIDHNTLYD CEDGLLDVTR GSTNVTVSNN WFREQDKVML 240 LGHDDGYVRD INMKVTVVYN HFGPNCNQRM PRIRHGYAHV ANNLYLGWMQ YAIGGSMGPS 300 LKSESNLFIA PKVGSKEVTW RKIGHTNGDK WEFHSVRDSF ENGASFAVTK GSRVQKPNYN 360 KEQIFQVADV KSVRFLTRSS GAIQCSKTSG C* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 3.0e-24 | 184 | 308 | 139 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 5.0e-46 | 112 | 308 | 205 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 4.0e-56 | 125 | 312 | 197 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 71 | 391 | 1 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 27 | 391 | 11 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 40 | 391 | 1 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 40 | 391 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 13 | 318 | 6 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 41 | 383 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 41 | 383 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pcl_A | 4e-17 | 108 | 308 | 61 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 3zsc_A | 2e-16 | 95 | 310 | 39 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.000000000000005 | 126 | 308 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
