| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr5g019170.1 |
| Family | PL1 |
| Protein Properties | Length: 529 Molecular Weight: 59250.7 Isoelectric Point: 9.5793 |
| Chromosome | Chromosome/Scaffold: 5 Start: 6984831 End: 6990156 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 192 | 391 | 0 |
| WITFKKDMNIKLIKSLLISSFTTIDGRGVNVHIADNACLMIFKATNIIIHSIRIHHCKAQTPGMVMGPNGKVISLGQVDGDAIRLVTASKIWIDHNTLYD CEDGLLDVTRGSTNVTVSNNWFREQDKVMLLGHDDGYVRDINMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWMQYAIGGSMGPSLKSESNLFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 529 Download |
| MDIPAGPRIC LGKDSAYHQM RMVLAILCRF YKFNLVPDHQ VKYRMMTILS MAHGLRVTVE 60 KLAKSGPSAM RLIEDSSFDD EEHSLGPTFI LWHFVLAVVI TIFFTSKFSF AKQTKLMGLK 120 MNMIDRCWRP NPEWRKHRQQ LATCSVGYAG KMTNNIGKGI IQYKVTDPND DPINPQPGTL 180 RYGASVIQGK VWITFKKDMN IKLIKSLLIS SFTTIDGRGV NVHIADNACL MIFKATNIII 240 HSIRIHHCKA QTPGMVMGPN GKVISLGQVD GDAIRLVTAS KIWIDHNTLY DCEDGLLDVT 300 RGSTNVTVSN NWFREQDKVM LLGHDDGYVR DINMKVTVVY NHFGPNCNQR MPRIRHGYAH 360 VANNLYLGWM QYAIGGSMGP SLKSESNLFI APKVGSKEVT WRKIGHGNGD KWEFHSVRDA 420 FENGASFAIS KGSRVPKPNY SKEQGFKVVD VKSVRTLTRS SGIDYTIKDL NVNVADPEAM 480 DIPVTLILSY IFVGIMPLYA INLDAVSLFA DSSFTFLAVL NDVISRFE* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02169 | PLN02169 | 3.0e-7 | 1 | 61 | 61 | + fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase | ||
| COG3866 | PelB | 6.0e-27 | 209 | 389 | 195 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| PLN03195 | PLN03195 | 7.0e-29 | 5 | 61 | 57 | + fatty acid omega-hydroxylase; Provisional | ||
| pfam00544 | Pec_lyase_C | 1.0e-53 | 211 | 389 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-66 | 198 | 393 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 152 | 462 | 1 | 310 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 108 | 462 | 11 | 359 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 121 | 462 | 1 | 344 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 121 | 462 | 1 | 342 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 89 | 399 | 1 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 122 | 463 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 122 | 463 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.000000000000001 | 179 | 391 | 42 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 0.00000000000004 | 189 | 389 | 61 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1vbl_A | 0.00000000000008 | 207 | 389 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
