| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr5g021240.1 |
| Family | AA4 |
| Protein Properties | Length: 725 Molecular Weight: 80238.8 Isoelectric Point: 8.2056 |
| Chromosome | Chromosome/Scaffold: 5 Start: 7919456 End: 7927833 |
| Description | FAD-linked oxidases family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| AA4 | 102 | 306 | 4.2e-21 |
| VRYFEEILGKKNVVQDEDKLSVANIDWMHKYKGSSKLILQPCNTDQVSQILKYCNSRCLAVVPQGGNTGLVGGSVPVFDEVIVSLSSMNNIISFDKVSGI LVCEAGCILENIMSFLDNEGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGVEAVLANGTVLDMLKTLRKDNTGYDLKHLFIGSEGSLGIV TKVSI | |||
| Full Sequence |
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| Protein Sequence Length: 725 Download |
| MINRNSRNTL RFLTRFHHHQ HNPSSQFTSK TVFDENCKQL KRNVLPTENK AFNFFNPLTN 60 FFKNKQLGHG ISCGILQKCY YGSMGGAVQR SSRFSELNDD DVRYFEEILG KKNVVQDEDK 120 LSVANIDWMH KYKGSSKLIL QPCNTDQVSQ ILKYCNSRCL AVVPQGGNTG LVGGSVPVFD 180 EVIVSLSSMN NIISFDKVSG ILVCEAGCIL ENIMSFLDNE GFIMPLDLGA KGSCQIGGNV 240 STNAGGLRLV RYGSLHGNVL GVEAVLANGT VLDMLKTLRK DNTGYDLKHL FIGSEGSLGI 300 VTKVSILTPP KLSSVNVALL ACKDYSCCQQ KVVVGRTECS VANLTPMLAK GPHPITCDAS 360 NRIRSMVCRS RNQPENIESG PKLTNKTIVI LSILNVELIT SSKKRSNRKK QKYLKDEITG 420 EDRGDCRRRS RCHGGDGNDV MKVDGGDGLL TVTLLSSATR SHGSAKREKH INVWMMIAYI 480 ISCYFCFCTA YQKLLQEAKR KLGEILSAFE FLDGQSMDLV TNHLEGARNP FSTSHHNFYV 540 LIETTGSDES SDKQKLEAFL LGSMENELIA DGVLAQDINQ ASTFWRIREG ISEALMKAGA 600 VYKYDVSIPV ENLYNLVEEM RSRLGDAANV IGYGHLGDGN LHLNVSVSQY DEKILSQIEP 660 FVYEWTSKKR GSISAEHGVG LMKANEIFYS QSHETVQMMA SIKNLMDPNH ILNPYKVLPH 720 SITS* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR00387 | glcD | 4.0e-21 | 541 | 716 | 185 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
| COG0277 | GlcD | 2.0e-33 | 496 | 720 | 234 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| TIGR00387 | glcD | 4.0e-43 | 142 | 319 | 178 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
| pfam02913 | FAD-oxidase_C | 5.0e-57 | 493 | 717 | 233 | + FAD linked oxidases, C-terminal domain. This domain has a ferredoxin-like fold. | ||
| COG0277 | GlcD | 7.0e-63 | 104 | 321 | 218 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002268002.1 | 0 | 58 | 330 | 48 | 319 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002268002.1 | 0 | 481 | 724 | 304 | 550 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002310828.1 | 0 | 38 | 330 | 9 | 300 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002310828.1 | 0 | 481 | 724 | 285 | 528 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002521506.1 | 0 | 88 | 330 | 92 | 334 | d-lactate dehydrognease 2, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3pm9_F | 0 | 97 | 345 | 13 | 260 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_F | 8e-32 | 493 | 718 | 246 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_E | 0 | 97 | 345 | 13 | 260 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_E | 8e-32 | 493 | 718 | 246 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_D | 0 | 97 | 345 | 13 | 260 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EY076056 | 246 | 81 | 326 | 0 |
| FE700277 | 228 | 498 | 725 | 0 |
| DW018478 | 196 | 1 | 196 | 0 |
| ES812965 | 246 | 74 | 319 | 0 |
| ES812965 | 35 | 479 | 513 | 0.86 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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