CAZyme Information

Basic Information
SpeciesMedicago truncatula
Cazyme IDMedtr5g025480.1
FamilyGH18
Protein PropertiesLength: 443 Molecular Weight: 49664.1 Isoelectric Point: 8.0952
ChromosomeChromosome/Scaffold: 5 Start: 10086352 End: 10091434
DescriptionGlycosyl hydrolase superfamily protein
View CDS
External Links
NCBI Taxonomy
Plaza
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH181084331.5e-33
  VLGYVTPWNSHGYEMAKRFNSKFTHLSPVWYDLKSQQTDLVLEGRHNADRGWISELKKTGEALECGGVYDILPRVVLEASPEELLRKKKHRNKAIDLIVT
  ECKEMGYDGVVLESWSRWAAYGILRDPSMRNLALQFVKQLGDALHSVSSENTSGQKLQLVYVIGPPSSEKLQAHDFGPKDLETLSEAVDGFSLMTYDFSN
  PHNPGPNAPLKWIQIILQILLGGASANSAQNIAPKIFLGINFYGNDFSLSKDSGGGAIIGRDYLALLEKHRPVLQWDKNSGEHVFFYTDDKNIKHAVFYP
  SLKSISLRLEEARTWGCGISIWEIGQ
Full Sequence
Protein Sequence     Length: 443     Download
MAKNRDQHRS SQSSGHRKSQ INSSSQQDQL THSASPSGAI KIVAFFIISS VIAVVAAYRL    60
RQSSPSKSNE FNVYQRGLVT TDTNYQDILT ENVKVSENAF TRRYDYPVLG YVTPWNSHGY    120
EMAKRFNSKF THLSPVWYDL KSQQTDLVLE GRHNADRGWI SELKKTGEAL ECGGVYDILP    180
RVVLEASPEE LLRKKKHRNK AIDLIVTECK EMGYDGVVLE SWSRWAAYGI LRDPSMRNLA    240
LQFVKQLGDA LHSVSSENTS GQKLQLVYVI GPPSSEKLQA HDFGPKDLET LSEAVDGFSL    300
MTYDFSNPHN PGPNAPLKWI QIILQILLGG ASANSAQNIA PKIFLGINFY GNDFSLSKDS    360
GGGAIIGRDY LALLEKHRPV LQWDKNSGEH VFFYTDDKNI KHAVFYPSLK SISLRLEEAR    420
TWGCGISIWE IGQGLDYFFY LL* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
pfam00704Glyco_hydro_186.0e-12190433265+
COG3858COG38584.0e-22101442352+
cd02874GH18_CFLE_spore_hydrolase2.0e-25108433345+
smart00636Glyco_188.0e-31108433359+
cd02876GH18_SI-CLP1.0e-150104442343+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
EMBLCAN82499.107344274516hypothetical protein [Vitis vinifera]
EMBLCBI40499.107344274435unnamed protein product [Vitis vinifera]
RefSeqNP_192013.107044266430glycosyl hydrolase family 18 protein [Arabidopsis thaliana]
RefSeqXP_002320856.106444229399predicted protein [Populus trichocarpa]
RefSeqXP_002523373.1014421432chitinase, putative [Ricinus communis]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3bxw_A07344245393B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp
PDB3bxw_B07344245393B Chain B, Crystal Structure Of Stabilin-1 Interacting Chitinase-Like Protein, Si-Clp
PDB3cz8_B0.00000219043188308A Chain A, Crystal Structure Of Putative Sporulation-Specific Glycosylase Ydhd From Bacillus Subtilis
PDB3cz8_A0.00000219043188308A Chain A, Crystal Structure Of Putative Sporulation-Specific Glycosylase Ydhd From Bacillus Subtilis
PDB1ll7_B0.00117442994342A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Transmembrane Domains
StartEnd
3658
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
DY27458242414200
DY27271431553180
EY6662432621784390
FC88105631313120
FC91674631153140
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_013_00129.1
Arabidopsis lyrata352729
Arabidopsis thalianaAT4G01040.1
Brachypodium distachyonBradi2g43770.1
Brassica rapaBra000939
Carica papayaevm.model.supercontig_273.9
Capsella rubellaCarubv10001405m
Chlamydomonas reinhardtiiCre03.g200650.t1.1
Citrus clementinaCiclev10020231m
Citrus sinensisorange1.1g014108morange1.1g014001m
Cucumis sativusCucsa.259130.2Cucsa.259130.1
Eucalyptus grandisEucgr.E00067.1
Fragaria vescamrna19212.1-v1.0-hybrid
Glycine maxGlyma03g41760.2Glyma19g44401.1Glyma03g41760.1
Gossypium raimondiiGorai.008G124300.1
Linum usitatissimumLus10005946Lus10029447
Malus domesticaMDP0000223446MDP0000126058
Manihot esculentacassava4.1_001521m
Mimulus guttatusmgv1a010899m
Oryza sativaLOC_Os01g43220.1
Panicum virgatumPavirv00054484mPavirv00033212m
Physcomitrella patensPp1s162_65V6.1
Phaseolus vulgarisPhvul.006G111900.1
Picea abiesMA_557825g0010
Populus trichocarpaPotri.014G096700.1Potri.014G096700.2Potri.014G096700.4Potri.014G096700.3
Prunus persicappa006146m
Ricinus communis29742.m001446
Setaria italicaSi002099m
Selaginella moellendorffii249085240
Sorghum bicolorSb03g028160.1
Thellungiella halophilaThhalv10028671m
Vitis viniferaGSVIVT01027076001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny