| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr5g030590.1 |
| Family | GT5 |
| Protein Properties | Length: 324 Molecular Weight: 36227 Isoelectric Point: 5.5239 |
| Chromosome | Chromosome/Scaffold: 5 Start: 12616192 End: 12619916 |
| Description | starch synthase 4 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 26 | 307 | 5.1e-32 |
| GGVVYSNRVVIMSSIHPKHAIIRNLSNELEPTLNVHGDKLSVAPYGFEKSTWDPQTDYFLPENFNAENMNGKAVCKVALLQRLGLSEHSSTILVGCSFSE GADIDEKKMKDIVLNAKKHDVQLWDLNPRPFGPEPKSGALDHSFIFMETSERPDLNQALESLHMEFKDDDNIKFVHSYDEALSHLLFAGSDSILCRSFHD PTDETPLKALRYGAVPIAVDSDSHTNRNFINHDQEATKYSKLINNTFGNMSLGLAIDELRSNPSKWKRRIMEAMAHDLSWDG | |||
| Full Sequence |
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| Protein Sequence Length: 324 Download |
| MTIGENIGMA PIVVLFRGIY EISCLGGVVY SNRVVIMSSI HPKHAIIRNL SNELEPTLNV 60 HGDKLSVAPY GFEKSTWDPQ TDYFLPENFN AENMNGKAVC KVALLQRLGL SEHSSTILVG 120 CSFSEGADID EKKMKDIVLN AKKHDVQLWD LNPRPFGPEP KSGALDHSFI FMETSERPDL 180 NQALESLHME FKDDDNIKFV HSYDEALSHL LFAGSDSILC RSFHDPTDET PLKALRYGAV 240 PIAVDSDSHT NRNFINHDQE ATKYSKLINN TFGNMSLGLA IDELRSNPSK WKRRIMEAMA 300 HDLSWDGECY EVHVAAYSAI KNL* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG0297 | GlgA | 5.0e-22 | 10 | 311 | 315 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 2.0e-26 | 26 | 306 | 308 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PLN02939 | PLN02939 | 1.0e-29 | 26 | 322 | 323 | + transferase, transferring glycosyl groups | ||
| PRK00654 | glgA | 5.0e-30 | 22 | 311 | 309 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 1.0e-34 | 26 | 320 | 311 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACD13787.1 | 0 | 26 | 323 | 410 | 687 | starch synthase V precursor [Lotus japonicus] |
| GenBank | ACD13789.1 | 0 | 26 | 323 | 407 | 682 | starch synthase V precursor [Vitis vinifera] |
| EMBL | CBI18615.1 | 0 | 18 | 323 | 486 | 769 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002262708.1 | 0 | 26 | 323 | 55 | 330 | PREDICTED: starch synthase V, partial [Vitis vinifera] |
| RefSeq | XP_002310316.1 | 0 | 26 | 323 | 396 | 669 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rzv_B | 0.0000000007 | 37 | 320 | 210 | 475 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1rzv_A | 0.0000000007 | 37 | 320 | 210 | 475 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1rzu_B | 0.0000000007 | 37 | 320 | 210 | 475 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
| PDB | 1rzu_A | 0.0000000007 | 37 | 320 | 210 | 475 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
| PDB | 3d1j_A | 0.000000001 | 21 | 306 | 194 | 463 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FG911714 | 272 | 54 | 319 | 0 |
| HS108086 | 227 | 26 | 252 | 0 |
| FE692411 | 247 | 84 | 324 | 0 |
| DV140721 | 267 | 58 | 324 | 0 |
| HO806257 | 208 | 123 | 324 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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