Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr5g033680.1 |
Family | GH28 |
Protein Properties | Length: 490 Molecular Weight: 54656.8 Isoelectric Point: 9.4342 |
Chromosome | Chromosome/Scaffold: 5 Start: 14090165 End: 14093504 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 84 | 438 | 0 |
CACKVSGATIKVPEKLKFLIKPITLQGPCMPDLTLQIDGTILAPPEVSSWPKSNLFQWINFKWVQNFTIKGYGTIDGQGSNWWSSSKLYDIQAIRFYSSN FVKIRDIKIKNSPLCHLKFDNSKGIKVDNITISSPENSPNTDGIHLQNTQDVEIQHSNIGTGDDCVSIQTGCSNIHVHHIKCGPGHGISLGGLGKDKSVA CVSDIIVEDISMKNTLYGARIKTWQYHVKSFTLKVMRSEQMFISDEYLHLTSRFCGVGGNGMVKNVSFSRIKVYDVMYPVMIDQYYCDKQICKNQTGTVI ISGVKFDQISGSYTLQPVHLACSNSIPCTDVDLTDIQLRPSLSYRGMQQAMCWNS |
Full Sequence |
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Protein Sequence Length: 490 Download |
MKRNNSFSQL FFMSLLVLIF VTFSVDARNT NIKKKLHKHH KKSHPLPHYD PHPIQPNTFD 60 IMSFGAKGNG VSDDSEAFLA AWKCACKVSG ATIKVPEKLK FLIKPITLQG PCMPDLTLQI 120 DGTILAPPEV SSWPKSNLFQ WINFKWVQNF TIKGYGTIDG QGSNWWSSSK LYDIQAIRFY 180 SSNFVKIRDI KIKNSPLCHL KFDNSKGIKV DNITISSPEN SPNTDGIHLQ NTQDVEIQHS 240 NIGTGDDCVS IQTGCSNIHV HHIKCGPGHG ISLGGLGKDK SVACVSDIIV EDISMKNTLY 300 GARIKTWQYH VKSFTLKVMR SEQMFISDEY LHLTSRFCGV GGNGMVKNVS FSRIKVYDVM 360 YPVMIDQYYC DKQICKNQTG TVIISGVKFD QISGSYTLQP VHLACSNSIP CTDVDLTDIQ 420 LRPSLSYRGM QQAMCWNSYG KSQGQLVPSS IDYCLRSGGG LIKRIAKSHD SNQRGLKKGK 480 YGTEKKSEK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-63 | 59 | 442 | 391 | + polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-64 | 58 | 448 | 401 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 4.0e-66 | 56 | 448 | 405 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 7.0e-68 | 91 | 421 | 338 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-89 | 64 | 469 | 418 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_189293.1 | 0 | 26 | 470 | 29 | 465 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266099.1 | 0 | 52 | 470 | 75 | 473 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312682.1 | 0 | 45 | 469 | 68 | 461 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315680.1 | 0 | 59 | 462 | 1 | 378 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527898.1 | 0 | 1 | 471 | 1 | 475 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 1e-17 | 58 | 456 | 20 | 361 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1bhe_A | 3e-17 | 149 | 373 | 110 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 3jur_D | 0.000000000009 | 46 | 254 | 15 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0.000000000009 | 46 | 254 | 15 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0.000000000009 | 46 | 254 | 15 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |