Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr5g034090.1 |
Family | GH28 |
Protein Properties | Length: 544 Molecular Weight: 59381.4 Isoelectric Point: 8.5504 |
Chromosome | Chromosome/Scaffold: 5 Start: 14308778 End: 14313289 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 146 | 497 | 0 |
ATCKVEASTMVIPANYIFYVGPISFSGPYCKANIVFQANNKVIFCQLDGTIIAPTNPNAWSGVTLQWLEFTKLEGITIQGNGVIDGRGSVWWQDFPYDNP IDDEEKLIVPLNQTQKPPMPVQNEMGRKMPSNKPTALRFYGSYGPTVTGITIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSS KLACGDDCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVNIHDSMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDK RVCTNHTSAVSLAGINYERIKGTYTVKPVHFACSDSLPCVDVSLTTVELKPI |
Full Sequence |
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Protein Sequence Length: 544 Download |
MSGFSLRGFT YMLLIAFLIW SSNFECCIAR RGKHLRQSRT FSSSLFKKKG KSYNGNSHNK 60 NHHSGGSNSK PKSPPHKSTP PLPKSPPSHK SVPSSPPISK PKYSPSIPPP KANNGVHSTF 120 FNVLDYGAKG DGNTDDTKAF QATWAATCKV EASTMVIPAN YIFYVGPISF SGPYCKANIV 180 FQANNKVIFC QLDGTIIAPT NPNAWSGVTL QWLEFTKLEG ITIQGNGVID GRGSVWWQDF 240 PYDNPIDDEE KLIVPLNQTQ KPPMPVQNEM GRKMPSNKPT ALRFYGSYGP TVTGITIQNS 300 PQCHLKFDNC NGVLVHDVSI SSPGDSPNTD GIHLQNSKDV LIHSSKLACG DDCISIQTGC 360 SNVYVHNVNC GPGHGISIGS LGKDNTRACV SNITVRDVNI HDSMNGVRIK TWQGGSGSVQ 420 GVLFSNIQVS EVQLPIVIDQ FYCDKRVCTN HTSAVSLAGI NYERIKGTYT VKPVHFACSD 480 SLPCVDVSLT TVELKPIQEK YHLYDPFCWQ TFGELRTPTV PPIGCLQIGK PSNNRIQTDH 540 DIC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-75 | 119 | 495 | 385 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-76 | 116 | 494 | 384 | + polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-77 | 115 | 495 | 387 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 3.0e-82 | 119 | 495 | 382 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-100 | 121 | 522 | 406 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK50769.1 | 0 | 191 | 543 | 3 | 355 | AF361321_1 polygalacturonase [Pisum sativum] |
GenBank | ABK95830.1 | 0 | 1 | 543 | 4 | 516 | unknown [Populus trichocarpa] |
RefSeq | XP_002266600.1 | 0 | 1 | 543 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 1 | 543 | 4 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 1 | 543 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 8e-23 | 223 | 446 | 113 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-19 | 221 | 494 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-19 | 221 | 494 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-19 | 221 | 494 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-19 | 221 | 494 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |