| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr5g035840.1 |
| Family | PL1 |
| Protein Properties | Length: 392 Molecular Weight: 44089 Isoelectric Point: 10.1489 |
| Chromosome | Chromosome/Scaffold: 5 Start: 15174089 End: 15175730 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 111 | 310 | 0 |
| WITFKKDMNIKLIKPLLISSFTTIDGRGVNVHIADNACLMISKATDIIIHSIRIHHCKAQTPGMVMGPNGKVIHLGQVDGDAIRLVTASKIWIDHNTLYD CEDGLLDVTRGSTNVTVSNNWFREQDKVMLLGHDDGYLRDINMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWMQYAIGGSMGPSLKSESNLFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 392 Download |
| MVFKGPNFLR WHFVLAIVIT IFFTSKFSFA KQSKLMGLKM NMIDRCWRPN PEWRKHRQQL 60 ATCSVGYAGK MTNNIGKGLT HYKVTDPNDD PIKPQPGTLR YGASVIQGKV WITFKKDMNI 120 KLIKPLLISS FTTIDGRGVN VHIADNACLM ISKATDIIIH SIRIHHCKAQ TPGMVMGPNG 180 KVIHLGQVDG DAIRLVTASK IWIDHNTLYD CEDGLLDVTR GSTNVTVSNN WFREQDKVML 240 LGHDDGYLRD INMKVTVVYN HFGPNCNQRM PRIRHGYAHV ANNLYLGWMQ YAIGGSMGPS 300 LKSESNLFIA PKVGSKEVTW RKIDHTNEDK WEFHSVKDAF ENGAAFAVTK GSRVPKPNYS 360 KEQIFQVVDV KSIRSLTRSS GAFQCSKTSI C* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 0.0006 | 97 | 236 | 146 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG3866 | PelB | 2.0e-27 | 128 | 308 | 198 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-53 | 130 | 308 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-66 | 117 | 312 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 71 | 391 | 1 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 27 | 391 | 11 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 40 | 391 | 1 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 40 | 391 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 12 | 318 | 5 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 41 | 381 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 41 | 381 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.000000000000001 | 138 | 310 | 74 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 0.00000000000003 | 108 | 308 | 61 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 3vmw_A | 0.00000000000003 | 133 | 318 | 82 | 254 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
