Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr5g038510.1 |
Family | PL1 |
Protein Properties | Length: 450 Molecular Weight: 50174.6 Isoelectric Point: 9.8363 |
Chromosome | Chromosome/Scaffold: 5 Start: 16488566 End: 16490702 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 169 | 368 | 0 |
IIFARSMKIRLNQELIMAGNKTIDGRGADVTIANGAGITIQFIENVIIHGIKIYDIMVGSGGLVRDSEDHYGLRTISDGDGISIFGSSHIWIDHVSMRNC RDGLIDAIMGSTAITISNSHFTDHNEVMLFGASDTYDGDQKMQITVVFNRFGKKLIQRMPRCRFGFIHVLNNFYNRWEMYAIGGTMHPTIISEGNKFIAP |
Full Sequence |
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Protein Sequence Length: 450 Download |
MAKLYHLFLL TCLVVTISTL VHANVKEDKA YWDRILPTLN TTYWQKKASI AAKANDKAYT 60 PDPYAVSGNL SSTVSEMIIG GINGRRNLVG LGNSSCMATN PIDRCWRCDP NWANNRKKLA 120 DCVQGFGRKT TGGKDGPIYV VTDPSDSDLV NPRPGTLRHA VTRNGPLWII FARSMKIRLN 180 QELIMAGNKT IDGRGADVTI ANGAGITIQF IENVIIHGIK IYDIMVGSGG LVRDSEDHYG 240 LRTISDGDGI SIFGSSHIWI DHVSMRNCRD GLIDAIMGST AITISNSHFT DHNEVMLFGA 300 SDTYDGDQKM QITVVFNRFG KKLIQRMPRC RFGFIHVLNN FYNRWEMYAI GGTMHPTIIS 360 EGNKFIAPNN GHAKEITKRT LVPEAEWKTW QWRSINDLYL NGAFFRQSGA ELINRPFSNK 420 DMIKAKPGSY VGRLTRYSRS LRCRVGKPC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 0.0002 | 43 | 88 | 47 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 4.0e-29 | 130 | 365 | 257 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-51 | 181 | 365 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 6.0e-63 | 175 | 369 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 44 | 449 | 35 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 44 | 449 | 64 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 43 | 449 | 34 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 35 | 449 | 8 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 1 | 449 | 4 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 100 | 436 | 2 | 340 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 100 | 436 | 2 | 340 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-23 | 157 | 367 | 38 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 1e-18 | 165 | 365 | 109 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 1e-17 | 172 | 342 | 132 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |