Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr5g043350.1 |
Family | GH28 |
Protein Properties | Length: 401 Molecular Weight: 43062.2 Isoelectric Point: 6.1685 |
Chromosome | Chromosome/Scaffold: 5 Start: 18640606 End: 18643080 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 56 | 386 | 0 |
CGTTQGTPTLIIPEGKTFMLQPLSFQGPCKSTTIQVEVKGTITAPKDIEAWKWKDNKRRSWVQFSKINGLAVYGEGTIDGQGAPWWKKYHDGDSNRPTAF QFIGCESLTISNLNHINSPRNHISIDSCKNASISNLQIIAPENSPNTDGIDIASSSNIIINNLSIKTGDDCIAINSGSNFINITGVLCGPGHGISVGSLG KGGEYATVEEVHVKDCTFTGTTNGARIKTWKGGSGYARKITYENIKLVEVKNPIIINQNYNPHIYDSSSEVVKVSDVTFLNIHGTSVNENTVQLNCDPKI GCDNIIIDHINITSVAGGEPHASCTNAHGTC |
Full Sequence |
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Protein Sequence Length: 401 Download |
MKSLFTLLMF VITSQCLCGR ITPDDGSNFN VLTYGANGDG NTDDSNAFVK AWNDVCGTTQ 60 GTPTLIIPEG KTFMLQPLSF QGPCKSTTIQ VEVKGTITAP KDIEAWKWKD NKRRSWVQFS 120 KINGLAVYGE GTIDGQGAPW WKKYHDGDSN RPTAFQFIGC ESLTISNLNH INSPRNHISI 180 DSCKNASISN LQIIAPENSP NTDGIDIASS SNIIINNLSI KTGDDCIAIN SGSNFINITG 240 VLCGPGHGIS VGSLGKGGEY ATVEEVHVKD CTFTGTTNGA RIKTWKGGSG YARKITYENI 300 KLVEVKNPII INQNYNPHIY DSSSEVVKVS DVTFLNIHGT SVNENTVQLN CDPKIGCDNI 360 IIDHINITSV AGGEPHASCT NAHGTCSSSY PDVSCLSDNK * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 2.0e-77 | 60 | 388 | 333 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-81 | 29 | 382 | 364 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 1.0e-87 | 15 | 399 | 392 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-101 | 29 | 397 | 376 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 9.0e-119 | 25 | 399 | 377 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 1 | 397 | 1 | 397 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 1 | 396 | 1 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
EMBL | CBI36307.1 | 0 | 1 | 398 | 1 | 404 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_195292.2 | 0 | 6 | 399 | 3 | 391 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 29 | 397 | 27 | 395 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 4e-25 | 133 | 346 | 80 | 297 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-25 | 133 | 346 | 80 | 297 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-25 | 133 | 346 | 80 | 297 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-25 | 133 | 346 | 80 | 297 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 4e-25 | 133 | 346 | 80 | 297 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |