Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr5g062290.1 |
Family | GH5 |
Protein Properties | Length: 506 Molecular Weight: 57622.5 Isoelectric Point: 8.9469 |
Chromosome | Chromosome/Scaffold: 5 Start: 25066375 End: 25070911 |
Description | |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 209 | 494 | 1.30321e-43 |
YGLKKAPQIMKEHWSTFIVEDDFKFIARNGLNAVRIPVGWWIASDPTPPWPYVGGSLHALDNAFLWAEKYGLKVMIDLHAAPDSQNGYEHSSSRDGAQEW GKTDESIKQTVQVIDFLTARYAKSPSLYAVELLNEPRSPDATLESLNKYYKDGYEAVRKHSSTVFVVFSNRLGSSMPREFFPLANGLMGSVIDVHYYSIF GDEFTNMSVQQNIDYIYNNRSSDLNFVTTSNGPLIFVGEWVAEWQVKGAIKNDYKRFGKAQLDVYGRATFGYAYWAFKNVNKHWSL |
Full Sequence |
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Protein Sequence Length: 506 Download |
MKNCINLKIW FLNLIIMLFV MLSTTHGRPN QKFRLKAVNL GGWLVTEGWI KPSLFDAIPS 60 KDFLDGTGLQ FKSVTTKKYL CAESGGGTIL VANRSSASGW ETFKLWRINK ETFRFRVFNK 120 QFVGLDGYNV VAVSNSSIDS ETFHIVKEND NSTRVRIKAS NGYFLQVKTE EVVTADVSLV 180 NEWRNDDPTI FVMTISDRMQ GEFQITNGYG LKKAPQIMKE HWSTFIVEDD FKFIARNGLN 240 AVRIPVGWWI ASDPTPPWPY VGGSLHALDN AFLWAEKYGL KVMIDLHAAP DSQNGYEHSS 300 SRDGAQEWGK TDESIKQTVQ VIDFLTARYA KSPSLYAVEL LNEPRSPDAT LESLNKYYKD 360 GYEAVRKHSS TVFVVFSNRL GSSMPREFFP LANGLMGSVI DVHYYSIFGD EFTNMSVQQN 420 IDYIYNNRSS DLNFVTTSNG PLIFVGEWVA EWQVKGAIKN DYKRFGKAQL DVYGRATFGY 480 AYWAFKNVNK HWSLEWMMKN GYIKF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam06268 | Fascin | 0.004 | 78 | 182 | 108 | + Fascin domain. This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven. Members of this family are histidine rich, typically contain the repeated motif of HHXH. | ||
cd00257 | Fascin | 4.0e-8 | 71 | 183 | 113 | + Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) | ||
pfam00150 | Cellulase | 4.0e-11 | 221 | 487 | 283 | + Cellulase (glycosyl hydrolase family 5). | ||
COG2730 | BglC | 1.0e-24 | 221 | 502 | 320 | + Endoglucanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0030674 | protein binding, bridging |
GO:0051015 | actin filament binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI18831.1 | 0 | 35 | 505 | 35 | 505 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_001064458.1 | 0 | 26 | 505 | 31 | 508 | Os10g0370500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002285806.1 | 0 | 11 | 505 | 9 | 508 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002464704.1 | 0 | 35 | 505 | 43 | 514 | hypothetical protein SORBIDRAFT_01g024390 [Sorghum bicolor] |
RefSeq | XP_002513884.1 | 0 | 1 | 505 | 1 | 506 | conserved hypothetical protein [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1eqp_A | 6e-34 | 202 | 501 | 45 | 376 | A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans |
PDB | 1eqc_A | 1e-33 | 202 | 501 | 45 | 376 | A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans |
PDB | 1cz1_A | 1e-33 | 202 | 501 | 45 | 376 | A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A Resolution |