| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr5g081290.1 |
| Family | GT47 |
| Protein Properties | Length: 260 Molecular Weight: 30386.5 Isoelectric Point: 8.612 |
| Chromosome | Chromosome/Scaffold: 5 Start: 33813163 End: 33813942 |
| Description | Exostosin family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GT47 | 3 | 138 | 1.9e-27 |
| QNFKVFMYQPNTNTNITQFSFKTEQESLFYSSLQNSSYLTQHPEQAHLFFLPFSSDTSTRSLARFISRIRNDFPYWNRSLGADHFYLSCDGISHVNDRNI VELKKNAIQIACFPTRHRSFIPHKDITLPPITNPHA | |||
| Full Sequence |
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| Protein Sequence Length: 260 Download |
| MAQNFKVFMY QPNTNTNITQ FSFKTEQESL FYSSLQNSSY LTQHPEQAHL FFLPFSSDTS 60 TRSLARFISR IRNDFPYWNR SLGADHFYLS CDGISHVNDR NIVELKKNAI QIACFPTRHR 120 SFIPHKDITL PPITNPHAPV RLSNEEFCVV EYQNDDVLWL GEALRLGCVP VVVTEEAVND 180 MPFMEVLRWR EMAVFVKSGV NIETDTWRER KGNMRRLGVV GSKHLRWNRP AQPFDAFNTI 240 MYQLWLRRHT IRYESVQSS* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03016 | Exostosin | 0.0001 | 142 | 196 | 58 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| pfam03016 | Exostosin | 3.0e-17 | 5 | 137 | 151 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_001774096.1 | 5.00264e-43 | 1 | 253 | 17 | 351 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_002282317.1 | 0 | 1 | 253 | 45 | 354 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311191.1 | 0 | 1 | 253 | 40 | 339 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002316258.1 | 0 | 1 | 253 | 40 | 333 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002524235.1 | 0 | 1 | 253 | 42 | 331 | conserved hypothetical protein [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GE344352 | 164 | 1 | 164 | 0 |
| BB924090 | 189 | 51 | 231 | 0 |
| EG631217 | 305 | 1 | 253 | 0 |
| GE349439 | 124 | 137 | 260 | 0 |
| GE345733 | 124 | 1 | 124 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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