Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr5g088280.1 |
Family | CE8 |
Protein Properties | Length: 330 Molecular Weight: 36697.4 Isoelectric Point: 6.6133 |
Chromosome | Chromosome/Scaffold: 5 Start: 37253816 End: 37257039 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 39 | 313 | 0 |
IIVDQQGKGEFKKIQPAIDSIKNKNDHWVKIHINPGKYVENVNIPYDKPCIILEGSDRKTTKITYGDGKATTTFFSFPPNVILSGITFENTFGNEGPAIA AIINGDKSAVFDCGFLGYQDTLFDATGRHYFKNCYIQGEVDFIFGEAQSYFEECVINATQDSSKPPGFITAQRRNSSTEPSGFVFRGGEVTGIGKVNLGR AYGPYSRVIFWETYLSSVVLSGGWDPWKYGGHEKNFIYAEVDCTGPGSNTQGRVPWEKKPNEININDYSLSSFIN |
Full Sequence |
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Protein Sequence Length: 330 Download |
MVNYISSRPM IFQLIIFISC CFCLGIAIDC GGNHVRNAII VDQQGKGEFK KIQPAIDSIK 60 NKNDHWVKIH INPGKYVENV NIPYDKPCII LEGSDRKTTK ITYGDGKATT TFFSFPPNVI 120 LSGITFENTF GNEGPAIAAI INGDKSAVFD CGFLGYQDTL FDATGRHYFK NCYIQGEVDF 180 IFGEAQSYFE ECVINATQDS SKPPGFITAQ RRNSSTEPSG FVFRGGEVTG IGKVNLGRAY 240 GPYSRVIFWE TYLSSVVLSG GWDPWKYGGH EKNFIYAEVD CTGPGSNTQG RVPWEKKPNE 300 ININDYSLSS FINEDRWLSN IPPIHKNHV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02682 | PLN02682 | 6.0e-71 | 39 | 320 | 302 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 5.0e-82 | 39 | 318 | 291 | + Probable pectinesterase | ||
PLN02432 | PLN02432 | 2.0e-86 | 39 | 318 | 283 | + putative pectinesterase | ||
PLN02176 | PLN02176 | 4.0e-89 | 29 | 322 | 307 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 2.0e-102 | 20 | 322 | 317 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002318946.1 | 0 | 14 | 322 | 11 | 338 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330032.1 | 0 | 10 | 322 | 6 | 323 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515259.1 | 0 | 27 | 322 | 349 | 660 | pectinesterase, putative [Ricinus communis] |
RefSeq | XP_002515259.1 | 0 | 27 | 325 | 24 | 342 | pectinesterase, putative [Ricinus communis] |
RefSeq | XP_002529267.1 | 0 | 34 | 325 | 35 | 340 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1e-37 | 39 | 318 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-30 | 40 | 320 | 6 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.000000000002 | 37 | 242 | 32 | 271 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 0.00000000009 | 113 | 273 | 109 | 288 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.00000000009 | 113 | 273 | 109 | 288 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |