Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr5g088290.1 |
Family | CE8 |
Protein Properties | Length: 341 Molecular Weight: 38101.1 Isoelectric Point: 6.3046 |
Chromosome | Chromosome/Scaffold: 5 Start: 37261395 End: 37264354 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 48 | 323 | 0 |
IIVDQQGRGAFKMIQPAIDSIKNKNDHWVKIHINPGKYVEHVNIPYDKPCIILEGSDRKTTTITYGDENIATPTFFSFPPNVILSGITFENTFGNSEPAV AAIINGDKSAVFNCGFLGYQDTLFDAMGRHYYKNCYIQGEVDFIFGEAQSYFEECVINATQDSSKPPGFITAQRRNSSTEPSGFVFRGGEVTGIGKVNLG RAYGPYSRVIFWETYLSSVVLSGGWDPWKYGGHEKNFIYAEVDCTGPGSNTQGRVPWEKKPNEININDYSLSSFIN |
Full Sequence |
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Protein Sequence Length: 341 Download |
MSLLTPHKST IIWLSLRPMI FHLIIFIGYC FCLGIAIDCG GNHVTNTIIV DQQGRGAFKM 60 IQPAIDSIKN KNDHWVKIHI NPGKYVEHVN IPYDKPCIIL EGSDRKTTTI TYGDENIATP 120 TFFSFPPNVI LSGITFENTF GNSEPAVAAI INGDKSAVFN CGFLGYQDTL FDAMGRHYYK 180 NCYIQGEVDF IFGEAQSYFE ECVINATQDS SKPPGFITAQ RRNSSTEPSG FVFRGGEVTG 240 IGKVNLGRAY GPYSRVIFWE TYLSSVVLSG GWDPWKYGGH EKNFIYAEVD CTGPGSNTQG 300 RVPWEKKPNE ININDYSLSS FINEDRWLNN IPTIQKKDYS * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02682 | PLN02682 | 1.0e-72 | 47 | 330 | 303 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 6.0e-83 | 47 | 328 | 292 | + Probable pectinesterase | ||
PLN02432 | PLN02432 | 6.0e-86 | 48 | 328 | 283 | + putative pectinesterase | ||
PLN02176 | PLN02176 | 1.0e-89 | 38 | 332 | 307 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 3.0e-102 | 30 | 332 | 316 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY73651.1 | 0 | 40 | 332 | 34 | 334 | hypothetical protein OsI_01540 [Oryza sativa Indica Group] |
RefSeq | XP_002318946.1 | 0 | 23 | 332 | 11 | 338 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330032.1 | 0 | 41 | 332 | 32 | 323 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515259.1 | 0 | 36 | 335 | 24 | 342 | pectinesterase, putative [Ricinus communis] |
RefSeq | XP_002529267.1 | 0 | 43 | 339 | 35 | 344 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1e-36 | 48 | 328 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 7e-31 | 49 | 330 | 6 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.0000000002 | 24 | 252 | 6 | 271 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 0.000000004 | 123 | 283 | 109 | 288 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.000000004 | 123 | 283 | 109 | 288 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |