Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr5g088300.1 |
Family | CE8 |
Protein Properties | Length: 333 Molecular Weight: 37158.8 Isoelectric Point: 6.1545 |
Chromosome | Chromosome/Scaffold: 5 Start: 37265617 End: 37268532 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 37 | 319 | 0 |
IVVDQQGRGAFKMIQHAIDSIVNNNNQWVKIHINPGKYVENIYIPNDKPCIILEGSDRITTIVSHGDRQATTTFVSNPPNVILSGITFEVNTTKMARNTF GSDGAAVAATISGDKSAIFNCGFLGYQDTLWDRTGRHYFKNCYIQGDVDFIFGEAQSFYEDCVINATQDISKFSGYITAQFRNSSNEPSGFVFRGGRIDG IGKVNLGRAWGPYSRVIFWETYLSSVVLPQGWDAWDYKGHENNFVYAEVDCTGPGSNTKGRVPWEKKPNEININDYSLSSFIN |
Full Sequence |
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Protein Sequence Length: 333 Download |
MGFPPQQKIF HLIIFFGYCF CLGRAIDCGG NHVTNIIVVD QQGRGAFKMI QHAIDSIVNN 60 NNQWVKIHIN PGKYVENIYI PNDKPCIILE GSDRITTIVS HGDRQATTTF VSNPPNVILS 120 GITFEVNTTK MARNTFGSDG AAVAATISGD KSAIFNCGFL GYQDTLWDRT GRHYFKNCYI 180 QGDVDFIFGE AQSFYEDCVI NATQDISKFS GYITAQFRNS SNEPSGFVFR GGRIDGIGKV 240 NLGRAWGPYS RVIFWETYLS SVVLPQGWDA WDYKGHENNF VYAEVDCTGP GSNTKGRVPW 300 EKKPNEININ DYSLSSFINE DGWLNNIPNI FL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02682 | PLN02682 | 2.0e-76 | 37 | 326 | 305 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 2.0e-80 | 37 | 324 | 294 | + Probable pectinesterase | ||
PLN02432 | PLN02432 | 7.0e-87 | 36 | 324 | 296 | + putative pectinesterase | ||
PLN02176 | PLN02176 | 5.0e-87 | 27 | 328 | 308 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 2.0e-100 | 19 | 328 | 316 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002318946.1 | 0 | 6 | 328 | 2 | 338 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330032.1 | 0 | 30 | 328 | 32 | 323 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515259.1 | 0 | 24 | 329 | 348 | 661 | pectinesterase, putative [Ricinus communis] |
RefSeq | XP_002515259.1 | 0 | 25 | 330 | 24 | 341 | pectinesterase, putative [Ricinus communis] |
RefSeq | XP_002529267.1 | 0 | 33 | 330 | 36 | 339 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 9.99995e-41 | 37 | 325 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-29 | 38 | 326 | 6 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.0000000000001 | 35 | 248 | 32 | 271 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.00000000009 | 142 | 248 | 132 | 247 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.00000000009 | 142 | 248 | 132 | 247 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |