Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr5g090160.1 |
Family | GH28 |
Protein Properties | Length: 451 Molecular Weight: 49266.8 Isoelectric Point: 6.7778 |
Chromosome | Chromosome/Scaffold: 5 Start: 38232170 End: 38236546 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 75 | 425 | 0 |
QREGGTTLYVPPGVYLTEPFNLTSHMTLHLAAGAVIKATQDSSNWPLIAPLPSYGRGRERPGGRYMSFIHGDGLQDVVITGENGTIDGQGDVWWNMWRKR TLQFTRPNLVEFVNSKDIIISNVIFKDSPFWNIHPVYCSNVVIRFATILAPRDSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRSSS NITIRRVSGSSPFAGIAVGSETSGGVENILAEHINLYNMGIGIHIKTNIGRGGYIKNINVSNVYIENARKGIKISGDVGDHADDKYDSNALPIVKGITMA NVWGVKVLQAGLIKGMKHSPFTDICLSDINLHGVNGTRSRTPSWQCSDVSG |
Full Sequence |
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Protein Sequence Length: 451 Download |
MFLGFTKLTL LFLYTCCWVC VLSENNEVIT CSNIVPLKYR TDNISLTDFG GVGDGHTLNT 60 KAFREAIYRI NHLSQREGGT TLYVPPGVYL TEPFNLTSHM TLHLAAGAVI KATQDSSNWP 120 LIAPLPSYGR GRERPGGRYM SFIHGDGLQD VVITGENGTI DGQGDVWWNM WRKRTLQFTR 180 PNLVEFVNSK DIIISNVIFK DSPFWNIHPV YCSNVVIRFA TILAPRDSPN TDGIDPDSSS 240 NVCIEDSYIS TGDDLVAVKS GWDEYGIAYG RSSSNITIRR VSGSSPFAGI AVGSETSGGV 300 ENILAEHINL YNMGIGIHIK TNIGRGGYIK NINVSNVYIE NARKGIKISG DVGDHADDKY 360 DSNALPIVKG ITMANVWGVK VLQAGLIKGM KHSPFTDICL SDINLHGVNG TRSRTPSWQC 420 SDVSGVALQV SPWPCSELIS HQLGSCANYY * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-22 | 48 | 435 | 401 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 6.0e-27 | 21 | 411 | 410 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 3.0e-31 | 41 | 445 | 425 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-32 | 81 | 423 | 355 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 6.0e-55 | 45 | 342 | 321 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 11 | 438 | 8 | 431 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 10 | 449 | 10 | 446 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 11 | 438 | 8 | 431 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002304552.1 | 0 | 37 | 450 | 1 | 412 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 28 | 449 | 26 | 445 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 9.99967e-42 | 43 | 407 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 9.99967e-42 | 43 | 407 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 9.99967e-42 | 43 | 407 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 9.99967e-42 | 43 | 407 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-18 | 88 | 376 | 51 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |