Basic Information | |
---|---|
Species | Medicago truncatula |
Cazyme ID | Medtr5g093970.1 |
Family | CE8 |
Protein Properties | Length: 340 Molecular Weight: 37585.1 Isoelectric Point: 6.7464 |
Chromosome | Chromosome/Scaffold: 5 Start: 40000515 End: 40004957 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 43 | 326 | 0 |
IIVDQQGKGAFQTIQAAIDSIKSQNNQWIMININPGIYKEKVLIPDRKSCIILKGSGSNNTIITYDDSSHKVGTSMSATFHSSPPNVILNGITFKVNNTY GSDGPAVAASIYGDKSAIFECSFIGYQDTLLSSKGRQYFKNCYIQGEDDFIFGEGQSYFENCVMNATQAESKPSGFVTSQRRESPNDPNGFVFRGGYVVG NGTVSLGRPWGPYSRVIFWGTYFTSVVTPQGWDAPGLDEGQEQNLTYAEVNCTGPGANIEKRVKWEKKPDSLNLNEYTLSSFIN |
Full Sequence |
---|
Protein Sequence Length: 340 Download |
MESDHRKYYS MYNGKTWNKK KCEKLMFFVM SIDCGGNQVA NTIIVDQQGK GAFQTIQAAI 60 DSIKSQNNQW IMININPGIY KEKVLIPDRK SCIILKGSGS NNTIITYDDS SHKVGTSMSA 120 TFHSSPPNVI LNGITFKVNN TYGSDGPAVA ASIYGDKSAI FECSFIGYQD TLLSSKGRQY 180 FKNCYIQGED DFIFGEGQSY FENCVMNATQ AESKPSGFVT SQRRESPNDP NGFVFRGGYV 240 VGNGTVSLGR PWGPYSRVIF WGTYFTSVVT PQGWDAPGLD EGQEQNLTYA EVNCTGPGAN 300 IEKRVKWEKK PDSLNLNEYT LSSFINNDGW LANVPSILL* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02682 | PLN02682 | 3.0e-75 | 42 | 333 | 306 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 3.0e-78 | 42 | 331 | 295 | + Probable pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-85 | 43 | 331 | 289 | + putative pectinesterase | ||
PLN02176 | PLN02176 | 6.0e-93 | 33 | 335 | 311 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 2.0e-100 | 25 | 335 | 322 | + probable pectinesterase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002263748.1 | 0 | 26 | 335 | 14 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277623.1 | 0 | 39 | 335 | 39 | 337 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318946.1 | 0 | 31 | 335 | 24 | 338 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330032.1 | 0 | 36 | 335 | 32 | 323 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529267.1 | 0 | 39 | 337 | 36 | 339 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 3e-38 | 39 | 331 | 5 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 5e-33 | 39 | 331 | 2 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 2e-17 | 41 | 303 | 32 | 339 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.00000000000003 | 41 | 254 | 5 | 247 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.00000000000003 | 41 | 254 | 5 | 247 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
DV984237 | 287 | 53 | 331 | 0 |
EX315894 | 275 | 67 | 331 | 0 |
EX317112 | 274 | 68 | 331 | 0 |
AM722128 | 266 | 38 | 303 | 0 |
GO009436 | 163 | 173 | 335 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|