Basic Information | |
---|---|
Species | Medicago truncatula |
Cazyme ID | Medtr5g095490.1 |
Family | CE8 |
Protein Properties | Length: 360 Molecular Weight: 40276.1 Isoelectric Point: 9.6795 |
Chromosome | Chromosome/Scaffold: 5 Start: 40697931 End: 40699808 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 61 | 353 | 0 |
IVVDRNGKGDSKTVQGAVDLVPNGNKQRVKIYIFPGTYRERVFVPKTKPYISFIGRRNLTASPVITWNSKSSDRGPNGQELGTYGSATVAVESNFFCATE ITFENTVVASPGGRGMQAVALRVDSDRAMFYKVKIKGTQDTLLDNTGTHYFYKCLIQGKVDFIFGNAKSLYEKCRLQSIAENYGAIAAHHRDSPLQDTGF SFVGCSIRGTGKVYLGRAWGDYSRVIYSNCHMDDIITPEGWSSWNHPERNKTAVFGEFKCHGIGANIKKRVPWSKQFSYGEAKPFLDINFING |
Full Sequence |
---|
Protein Sequence Length: 360 Download |
MMLSCRVVVV LFVMVFVEVD LAECVKGGVR NYISWEDLIV NEQRLVVKKS NNVQNNVVRV 60 IVVDRNGKGD SKTVQGAVDL VPNGNKQRVK IYIFPGTYRE RVFVPKTKPY ISFIGRRNLT 120 ASPVITWNSK SSDRGPNGQE LGTYGSATVA VESNFFCATE ITFENTVVAS PGGRGMQAVA 180 LRVDSDRAMF YKVKIKGTQD TLLDNTGTHY FYKCLIQGKV DFIFGNAKSL YEKCRLQSIA 240 ENYGAIAAHH RDSPLQDTGF SFVGCSIRGT GKVYLGRAWG DYSRVIYSNC HMDDIITPEG 300 WSSWNHPERN KTAVFGEFKC HGIGANIKKR VPWSKQFSYG EAKPFLDINF INGNQWLRL* 360 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 7.0e-102 | 67 | 358 | 292 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 9.0e-105 | 67 | 357 | 294 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 2.0e-106 | 67 | 357 | 294 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 5.0e-123 | 67 | 359 | 295 | + pectinesterase family protein | ||
PLN02671 | PLN02671 | 1.0e-177 | 30 | 359 | 330 | + pectinesterase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEE67559.1 | 0 | 60 | 359 | 74 | 398 | hypothetical protein OsJ_25062 [Oryza sativa Japonica Group] |
RefSeq | NP_200370.1 | 0 | 29 | 359 | 35 | 380 | QRT1 (QUARTET 1); pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002264297.1 | 0 | 32 | 359 | 34 | 359 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298857.1 | 0 | 56 | 359 | 15 | 318 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522727.1 | 0 | 2 | 359 | 28 | 383 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 61 | 358 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 6e-40 | 62 | 358 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 1e-16 | 62 | 345 | 34 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.000000000000005 | 72 | 329 | 19 | 315 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.000000000000005 | 72 | 329 | 19 | 315 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |