y
Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr5g097860.1 |
Family | GH28 |
Protein Properties | Length: 344 Molecular Weight: 36971 Isoelectric Point: 7.8992 |
Chromosome | Chromosome/Scaffold: 5 Start: 41804217 End: 41805989 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 46 | 339 | 0 |
WKAACGSTTASKVIIPRGIYKIHAVDVKGPCKAPIEVQVDGTIQASQNPDELNDASYQWVKFGYVDYFTLSGKGVFDGNGETAWTQNDCGKNSTCKRRSM NFGFNFLKLSIVQDIISKDSKNFHVNVLGCTNFTFDGLTITAPATSKNTDGIHIGRSTDDVKVLNTNISTGDDCISLGQGSRQITVQNVNCGPGHGISVG SLGKNPKEEATEHVLVKNCTISNTDNGVRIKTWPSSPGTSPITDMHFEDTIMVNVLNPVIIDQEYCPWNQCSKQVPSKIKISKVIFKNIRGTTT |
Full Sequence |
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Protein Sequence Length: 344 Download |
MDMKLSITAI VLSFATLGIA QPNIFDIKSF GGASNADITM AFTNAWKAAC GSTTASKVII 60 PRGIYKIHAV DVKGPCKAPI EVQVDGTIQA SQNPDELNDA SYQWVKFGYV DYFTLSGKGV 120 FDGNGETAWT QNDCGKNSTC KRRSMNFGFN FLKLSIVQDI ISKDSKNFHV NVLGCTNFTF 180 DGLTITAPAT SKNTDGIHIG RSTDDVKVLN TNISTGDDCI SLGQGSRQIT VQNVNCGPGH 240 GISVGSLGKN PKEEATEHVL VKNCTISNTD NGVRIKTWPS SPGTSPITDM HFEDTIMVNV 300 LNPVIIDQEY CPWNQCSKQV PSKIKISKVI FKNIRGTTTA AAV* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-66 | 11 | 340 | 337 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-70 | 24 | 338 | 323 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 2.0e-71 | 3 | 338 | 338 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-89 | 50 | 341 | 292 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-106 | 24 | 341 | 320 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO62938.1 | 0 | 3 | 338 | 1 | 340 | polygalactorunase PG11 precursor [Medicago sativa] |
DDBJ | BAA89476.1 | 0 | 1 | 343 | 1 | 343 | polygalacturonase [Salix gilgiana] |
EMBL | CAA72003.1 | 0 | 1 | 338 | 1 | 338 | polygalacturonase [Medicago sativa] |
EMBL | CAF07050.1 | 0 | 1 | 343 | 1 | 343 | polygalacturonase precursor [Medicago truncatula] |
Swiss-Prot | Q40312 | 0 | 3 | 341 | 1 | 343 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.0000000000001 | 164 | 310 | 171 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 0.00000000002 | 120 | 342 | 80 | 309 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 2iq7_G | 0.0000000005 | 189 | 310 | 149 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.0000000005 | 189 | 310 | 149 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.0000000005 | 189 | 310 | 149 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |