y
Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr6g005630.1 |
Family | GH28 |
Protein Properties | Length: 426 Molecular Weight: 45517.5 Isoelectric Point: 7.308 |
Chromosome | Chromosome/Scaffold: 6 Start: 464062 End: 468211 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 70 | 384 | 0 |
AACKMEASTMVVPSGSVFLVKPISFSGPNCEPNIVFQLDGKIIAPTSPSAWGSGTLQWLEFTKLNKITIKGKGVIDGQGSVWWNDSEKLPKTKPTALRFY GSDGVSVSGITIQNSQQTHLKFDSCTNVQVFDITTSSPGDSPNTDGIHLQNSQDVVISGSTLSCGDDCVSIQTGCSNILVHNVNCGPGHGISIGSLGKEN TKACVSNVTVRDVTLQNTLTGVRIKTWQGGSGSVQNIMFSNIQVSDVKTPIMIDQFYCDGGKCRNVTSAVAVSSIHYTNVHGTYTKEPIYFACSDSLPCK GITLDTIKLESSQNS |
Full Sequence |
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Protein Sequence Length: 426 Download |
MKTMNINTIT LIITTAFLVL FSCLERCSAT RGHSWRKLKA TSSTFNVLDF GAKGDGHSDD 60 TKAFEDAWAA ACKMEASTMV VPSGSVFLVK PISFSGPNCE PNIVFQLDGK IIAPTSPSAW 120 GSGTLQWLEF TKLNKITIKG KGVIDGQGSV WWNDSEKLPK TKPTALRFYG SDGVSVSGIT 180 IQNSQQTHLK FDSCTNVQVF DITTSSPGDS PNTDGIHLQN SQDVVISGST LSCGDDCVSI 240 QTGCSNILVH NVNCGPGHGI SIGSLGKENT KACVSNVTVR DVTLQNTLTG VRIKTWQGGS 300 GSVQNIMFSN IQVSDVKTPI MIDQFYCDGG KCRNVTSAVA VSSIHYTNVH GTYTKEPIYF 360 ACSDSLPCKG ITLDTIKLES SQNSNVPFCW KAYGELKTEI VPPVDCLQRG NPSSGGITSN 420 KESSC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 3.0e-83 | 17 | 381 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 2.0e-85 | 45 | 378 | 339 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-88 | 76 | 387 | 320 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 5.0e-100 | 41 | 386 | 359 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-116 | 45 | 403 | 369 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD46483.1 | 0 | 1 | 423 | 1 | 442 | polygalacturonase PG1 [Glycine max] |
GenBank | AAD46484.1 | 0 | 4 | 425 | 3 | 439 | polygalacturonase PG2 [Glycine max] |
GenBank | ACU24545.1 | 0 | 1 | 423 | 1 | 442 | unknown [Glycine max] |
DDBJ | BAH56488.1 | 0 | 42 | 424 | 98 | 507 | polygalacturonase 1 [Prunus persica] |
RefSeq | XP_002521450.1 | 0 | 33 | 410 | 64 | 456 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 1e-26 | 136 | 387 | 72 | 331 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-26 | 136 | 387 | 72 | 331 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-26 | 136 | 387 | 72 | 331 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-26 | 136 | 387 | 72 | 331 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 1e-26 | 136 | 387 | 72 | 331 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |