y
Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr6g025590.1 |
Family | CE8 |
Protein Properties | Length: 383 Molecular Weight: 42307.7 Isoelectric Point: 9.4605 |
Chromosome | Chromosome/Scaffold: 6 Start: 5948646 End: 5955703 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 49 | 217 | 0 |
VKVSKDASSKFKTVQDALNSIQQPNNKRVIVSIATGVYREKIVIPITLPFITFLGDAKGNSKITWNDSYSTIGSDGKPLETYKSASVAVEADYFIAINMI FKNTAYFPTKVEQAVAIRVTGNKAAFYNCLFYGVQDTLYDHKGLHYFKNCYIQGAVDFVFGDGTSLYER |
Full Sequence |
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Protein Sequence Length: 383 Download |
MVLKILFLQF FCLVILISSS SSSSLSDFTN TSNGIDLKLQ QAEADPVIVK VSKDASSKFK 60 TVQDALNSIQ QPNNKRVIVS IATGVYREKI VIPITLPFIT FLGDAKGNSK ITWNDSYSTI 120 GSDGKPLETY KSASVAVEAD YFIAINMIFK NTAYFPTKVE QAVAIRVTGN KAAFYNCLFY 180 GVQDTLYDHK GLHYFKNCYI QGAVDFVFGD GTSLYERVGE GGSVTDRIAG PCYGCRGFGR 240 VKLGSKLDAS PRLDSKTFTL CWCCIFLASS GVLVNIEDHI IPQVTKFKYL KSIVQNTKNL 300 NHKIQAGWLK LSSASGALYD TKVPFKSKGI FLTGRGKIDD VVRDRVNCGN NSQSDSWFFQ 360 IAMKEEEKRW ANCGAKMVNK IR* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 1.0e-46 | 47 | 216 | 174 | + pectinesterase | ||
pfam01095 | Pectinesterase | 1.0e-48 | 49 | 213 | 165 | + Pectinesterase. | ||
PLN02634 | PLN02634 | 1.0e-57 | 48 | 216 | 172 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 6.0e-65 | 49 | 216 | 172 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 8.0e-68 | 27 | 222 | 204 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79461.1 | 0 | 35 | 216 | 70 | 253 | hypothetical protein [Vitis vinifera] |
GenBank | EEC69509.1 | 0 | 35 | 215 | 95 | 278 | hypothetical protein OsI_38743 [Oryza sativa Indica Group] |
RefSeq | NP_001067039.1 | 0 | 35 | 215 | 94 | 277 | Os12g0563700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002320279.1 | 0 | 58 | 216 | 2 | 162 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002443368.1 | 0 | 7 | 216 | 79 | 293 | hypothetical protein SORBIDRAFT_08g018360 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2e-24 | 49 | 210 | 9 | 162 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_B | 6e-17 | 47 | 215 | 7 | 185 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_A | 6e-17 | 47 | 215 | 7 | 185 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntp_B | 6e-17 | 47 | 215 | 7 | 185 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntp_A | 6e-17 | 47 | 215 | 7 | 185 | A Chain A, Pectin Methylesterase From Carrot |