Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr6g042660.1 |
Family | CE8 |
Protein Properties | Length: 374 Molecular Weight: 42167 Isoelectric Point: 9.966 |
Chromosome | Chromosome/Scaffold: 6 Start: 7990868 End: 7995993 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 37 | 134 | 1.3e-26 |
IIVDPLGNGNFTTIKSAIESIPLNNKHWVAIRVKAGTYREKIEIPRDKPYIILKGAGKRKTIVEWDDHAPISQSATFSSMADNVVVKSISFRSHTYTA | |||
CE8 | 176 | 362 | 0 |
NTYKNPIKNHTHIAAVAAMISGDKTYFFRVGFFGYQDTLWDNNGRHYYKLCTIQGAIDFIFGAGQSLFERCSISVIGGGYITAQGRTNANDESGFVFKDC HIFGNARAYLGRPWRRYARVLFYKTNMTKIVAPRGWNPWSFDGEEDQITFAEYGNFGPGADTSKRVKWTKKLDLETVENMASLNFIN |
Full Sequence |
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Protein Sequence Length: 374 Download |
MFRFLLFAFI FVGLKQDGAN AQIYKRVGNK LLPYSTIIVD PLGNGNFTTI KSAIESIPLN 60 NKHWVAIRVK AGTYREKIEI PRDKPYIILK GAGKRKTIVE WDDHAPISQS ATFSSMADNV 120 VVKSISFRSH TYTASGSLSF RRDSLHQEAV GSRSLSCLAH RRSLPALVSR GCYNANTYKN 180 PIKNHTHIAA VAAMISGDKT YFFRVGFFGY QDTLWDNNGR HYYKLCTIQG AIDFIFGAGQ 240 SLFERCSISV IGGGYITAQG RTNANDESGF VFKDCHIFGN ARAYLGRPWR RYARVLFYKT 300 NMTKIVAPRG WNPWSFDGEE DQITFAEYGN FGPGADTSKR VKWTKKLDLE TVENMASLNF 360 INTPEEWINY QPF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02682 | PLN02682 | 2.0e-76 | 23 | 368 | 359 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 1.0e-76 | 37 | 368 | 334 | + putative pectinesterase | ||
PLN02480 | PLN02480 | 2.0e-79 | 36 | 368 | 340 | + Probable pectinesterase | ||
PLN02176 | PLN02176 | 5.0e-95 | 5 | 372 | 376 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 2.0e-149 | 36 | 372 | 346 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40838.1 | 0 | 34 | 372 | 42 | 341 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_189055.1 | 0 | 37 | 362 | 34 | 323 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002263748.1 | 0 | 32 | 372 | 27 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323773.1 | 0 | 37 | 372 | 1 | 288 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518106.1 | 0 | 10 | 373 | 15 | 336 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 3.00004e-41 | 37 | 343 | 9 | 281 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 9e-36 | 38 | 343 | 6 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 6e-18 | 34 | 339 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 6e-18 | 34 | 339 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 6e-18 | 34 | 339 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |