Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr6g042690.1 |
Family | CE8 |
Protein Properties | Length: 334 Molecular Weight: 37803.8 Isoelectric Point: 9.2859 |
Chromosome | Chromosome/Scaffold: 6 Start: 8005098 End: 8009563 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 39 | 322 | 0 |
IVVDQSGNGHFSTIQSAIDSIPFYNTNWVAIRVKAGIYRASPRRKSCDPTEQILHYIGRGLGKRKTIVEWYDPDGPERSPTFSILADNIHVRCMSFRNSY NNPINGNRKLRAVATTVSGDKVNFFRVAFYGYQDTLYDANGRHYYKLCTIQGAVDFIFGAGQSLFERCSISVIGGGFITAQGRESPNDTNGFVFKDCHIF GNANTYLGRPWRPYARVLFYKTNMTKIVEPSGWDSWSPDGREDLSTYAEYGNFGPGADTSKRVSWAKKLDLSTVENMANLNFIN |
Full Sequence |
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Protein Sequence Length: 334 Download |
MFRLFLVPFI FLLVGLVVQE TNGQYYKKVG NKIFPFSTIV VDQSGNGHFS TIQSAIDSIP 60 FYNTNWVAIR VKAGIYRASP RRKSCDPTEQ ILHYIGRGLG KRKTIVEWYD PDGPERSPTF 120 SILADNIHVR CMSFRNSYNN PINGNRKLRA VATTVSGDKV NFFRVAFYGY QDTLYDANGR 180 HYYKLCTIQG AVDFIFGAGQ SLFERCSISV IGGGFITAQG RESPNDTNGF VFKDCHIFGN 240 ANTYLGRPWR PYARVLFYKT NMTKIVEPSG WDSWSPDGRE DLSTYAEYGN FGPGADTSKR 300 VSWAKKLDLS TVENMANLNF INTPEEWINY QPF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02682 | PLN02682 | 6.0e-74 | 26 | 328 | 317 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 2.0e-74 | 1 | 328 | 351 | + Probable pectinesterase | ||
PLN02432 | PLN02432 | 2.0e-79 | 39 | 307 | 272 | + putative pectinesterase | ||
PLN02176 | PLN02176 | 2.0e-88 | 38 | 332 | 304 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 2.0e-134 | 38 | 332 | 304 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40838.1 | 0 | 34 | 332 | 40 | 341 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197400.1 | 0 | 35 | 322 | 26 | 318 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002263748.1 | 0 | 36 | 332 | 29 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323773.1 | 0 | 39 | 332 | 1 | 288 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518106.1 | 0 | 20 | 333 | 31 | 336 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2e-37 | 39 | 303 | 9 | 281 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 7e-34 | 40 | 303 | 6 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 1e-18 | 36 | 299 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 1e-18 | 36 | 299 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 1e-18 | 36 | 299 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |