Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr7g006750.1 |
Family | CE13 |
Protein Properties | Length: 1331 Molecular Weight: 149117 Isoelectric Point: 5.9916 |
Chromosome | Chromosome/Scaffold: 7 Start: 1053672 End: 1059076 |
Description | Plant protein of unknown function (DUF639) |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE13 | 466 | 560 | 2.3e-34 |
DAILSGCSAGGLTTILHYDGFRALFPNETRVKCVSGAGYFVNVNDISGDHYIEDYFGQVVVTHGSEKSLPSSCTSMLSPRLCFFPQYMASNIQTP |
Full Sequence |
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Protein Sequence Length: 1331 Download |
MGDQPVTRTE FGSLNTAAKA LLDQMLTLAA KIGNINNNNH NYNNRNNHNR RCEPIRVRGR 60 NNQIRRCEPI RFHDGNNRIN SDLCSIEDFI AHDVIDINDI ENNVDLMVLG EISRNHGKGE 120 ALETIHEGYG DQQVVPGMEK DGTISEDSIG VPRETLTKVP RKTLTNLHVD HLLQRSSTLP 180 SSSNSHATGV HSLSGGVNKV SSLEAKAHQQ ETALRIICCN DRIGGDIGRS GNMIRVPQSE 240 TGVTISVGPS VAECEDRLIT TASESPELRY SSPPSSAHVF DPGPHLFLHD RSVNFTTVME 300 YDEIMTKIAA SYTCSVNWIK EVDYISPDCF MYLVEWLLLL TSCWKGFIHS TKSSFIEWLI 360 CQDANSLSNF SFMSDELDNA HDFIANILRE CSLHLSSGSG KYLQLLGNLL GKRHITNQLQ 420 LEFCNVLQEG KKHLGLEVFA KAFKVIGNPL IIAKLRNNSR KIMCLDAILS GCSAGGLTTI 480 LHYDGFRALF PNETRVKCVS GAGYFVNVND ISGDHYIEDY FGQVVVTHGS EKSLPSSCTS 540 MLSPRLCFFP QYMASNIQTP SGMELAENEY ILHVEGAASS QRVVRHIGST SWLGRLTLTN 600 YSLYFQASGV IKYEDAVKID LSKDVEQTVK PAATSPSGAQ LFDKAIVIES TDLSEGFVLK 660 FPELTSSTRC DHWLALIRKM HVGTIVGTIR LHAAREMLRI SPPVPTKFLI FSLYNKIPKG 720 GYVLEELPDS LTKVNCGQPS SILKSMYLAG PVVSNSMVEE VSQVDKSVNV RDDSPSLESA 780 IKQSREEEKK VLITKATNEE RKKELEEVKM NIEKTTNEVN SLRGASILLQ SELEEEMLIL 840 NNLKESIRHD TTFPQWDKGN CYIFQTRLSL HFILWDPGGW SLVNWRTRHG RLKKVTVNSV 900 ESQDISPDIF LFHPNPKFSS NAPEAIDNTT NSTKIPSIHK QQASTILKTN KHQPSAYPKP 960 NKTFAQAVSN ICVVPTSQLP KPILKGDNFS ISIPEDAYLV GMEGSTPLAV FDLHNKLSSL 1020 WKDLGKWGVS SLGKGYYEFC FSSLEDLKRV RFIASWNLNP GILKFFAWSK DFNPNLQTSS 1080 SAQVWLRIYN LPQEYWQSKI LFSIANSVGT ISIEMKPRRT QEFKRISRRN KERNLSKLLM 1140 VEGYRGGKEN DLIVVDDKVD DIRVGNNGNK DKNIELVEKL ASGSKSDDLV QNNRFDALLR 1200 TENVTIRTEM IAYDNQLEDE TNEELEQKRN EDQSSLQADS ENSNDSEFVD ATQHHEDSNV 1260 SSSQEQDKED VQDVGLTLVD LEKENRLFLE QSWANIADGA DAEQRLLQDL EKHDELNQGT 1320 STDDFKVVQR * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam05701 | DUF827 | 0.003 | 786 | 831 | 46 | + Plant protein of unknown function (DUF827). This family consists of several plant proteins of unknown function. Several sequences in this family are described as being "myosin heavy chain-like". | ||
cd02396 | PCBP_like_KH | 0.0001 | 214 | 260 | 48 | + K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are represented here, in tandem arrangement, followed by a large spacer region, with the third domain near the C-terminal end of the protein. The poly(C) binding proteins (PCBPs) can be divided into two groups, hnRNPs K/J and the alphaCPs, which share a triple KH domain configuration and poly(C) binding specificity. They play roles in mRNA stabilization, translational activation, and translational silencing. Nova-1 and Nova-2 are nuclear RNA-binding proteins that regulate splicing. This group also contains plant proteins that seem to have two tandem repeat arrrangements, like Hen4, a protein that plays a role in AGAMOUS (AG) pre-mRNA processing and important step in plant development. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. | ||
pfam14111 | DUF4283 | 2.0e-20 | 1013 | 1126 | 117 | + Domain of unknown function (DUF4283). This domain family is found in plants, and is approximately 100 amino acids in length. Considering the very diverse range of other domains it is associated with it is possible that this domain is a binding/guiding region. There are two highly conserved tryptophan residues. | ||
pfam03283 | PAE | 3.0e-32 | 467 | 560 | 94 | + Pectinacetylesterase. | ||
pfam04842 | DUF639 | 1.0e-65 | 558 | 823 | 317 | + Plant protein of unknown function (DUF639). Plant protein of unknown function. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79515.1 | 0 | 559 | 804 | 221 | 498 | hypothetical protein [Vitis vinifera] |
EMBL | CBI31222.1 | 0 | 559 | 804 | 221 | 474 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002269768.1 | 0 | 559 | 804 | 196 | 473 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002319716.1 | 0 | 560 | 804 | 195 | 464 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525704.1 | 0 | 548 | 804 | 171 | 461 | conserved hypothetical protein [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CD836116 | 212 | 560 | 746 | 0 |
GE554019 | 194 | 559 | 731 | 0 |
CJ638556 | 216 | 562 | 752 | 0 |
DY664648 | 223 | 605 | 802 | 0 |
AW509030 | 171 | 629 | 775 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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