Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr7g034740.1 |
Family | AA7 |
Protein Properties | Length: 549 Molecular Weight: 61385.2 Isoelectric Point: 5.5228 |
Chromosome | Chromosome/Scaffold: 7 Start: 9964008 End: 9965743 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 70 | 532 | 0 |
NLRFTEPNIPKPIAIVLPKTLVQLQNSVACCREFSLEIRVRSGGHSYEGTSSVADDGTLFVIIDMMNLNHVWVNMETKIAWVEGGATLGETYYAISQASD AYGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVVDALLVDADGRVLERATMGEDVFWAIRGGGGGLWGIVYAWKIQLLKVPQVVTSFIASRTGTKN HIAKLVNKWQHVAPNLEDEFYLSCFVGAGLPEAKRIGLSTTFKGFYLGPMSKAISILNQDFPELDVVDEECREMSWIESVVFFSGLNDGASVSDLRNRYM QDKEYFKAKSDFVRSYVPLVGIKTALDILEKEPKGFVILDPYGGMMHNISSESIAFPHRKGNIFTIQYLIYWKEADNDKGSDYIDWIRGFYSSMTPFVSY GPRAAYINYMDFDLGVMELISFDDDLVKARVWGEKYFLSNYDRLVRAKTLIDPDNVFTNQQGI |
Full Sequence |
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Protein Sequence Length: 549 Download |
MFNFFKRLCL LIFFLLLSFD VSVCLSSSLG NFKFCLDNNK IKNFTVFPYK EHDQSYANDY 60 YKILNFSVQN LRFTEPNIPK PIAIVLPKTL VQLQNSVACC REFSLEIRVR SGGHSYEGTS 120 SVADDGTLFV IIDMMNLNHV WVNMETKIAW VEGGATLGET YYAISQASDA YGFSAGSCPT 180 VGVGGHIGGG GFGLLSRKYG LAADNVVDAL LVDADGRVLE RATMGEDVFW AIRGGGGGLW 240 GIVYAWKIQL LKVPQVVTSF IASRTGTKNH IAKLVNKWQH VAPNLEDEFY LSCFVGAGLP 300 EAKRIGLSTT FKGFYLGPMS KAISILNQDF PELDVVDEEC REMSWIESVV FFSGLNDGAS 360 VSDLRNRYMQ DKEYFKAKSD FVRSYVPLVG IKTALDILEK EPKGFVILDP YGGMMHNISS 420 ESIAFPHRKG NIFTIQYLIY WKEADNDKGS DYIDWIRGFY SSMTPFVSYG PRAAYINYMD 480 FDLGVMELIS FDDDLVKARV WGEKYFLSNY DRLVRAKTLI DPDNVFTNQQ GILPMSFASS 540 NAKELLSS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 6.0e-11 | 81 | 526 | 466 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam08031 | BBE | 2.0e-14 | 474 | 532 | 59 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
pfam01565 | FAD_binding_4 | 8.0e-19 | 81 | 200 | 121 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI16966.1 | 0 | 21 | 543 | 296 | 775 | unnamed protein product [Vitis vinifera] |
EMBL | CBI16966.1 | 0 | 358 | 513 | 66 | 224 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002264336.1 | 0 | 6 | 535 | 3 | 534 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002329230.1 | 0 | 35 | 534 | 20 | 525 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002533924.1 | 0 | 1 | 543 | 1 | 543 | d-lactate dehydrogenase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3fw9_A | 0 | 35 | 536 | 5 | 495 | A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine |
PDB | 3d2j_A | 0 | 14 | 536 | 8 | 520 | A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine |
PDB | 3d2h_A | 0 | 14 | 536 | 8 | 520 | A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine |
PDB | 3d2d_A | 0 | 14 | 536 | 8 | 520 | A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline |
PDB | 4ec3_A | 0 | 35 | 536 | 11 | 501 | A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline |