Basic Information | |
---|---|
Species | Medicago truncatula |
Cazyme ID | Medtr7g038050.1 |
Family | GH28 |
Protein Properties | Length: 480 Molecular Weight: 52944.6 Isoelectric Point: 7.9018 |
Chromosome | Chromosome/Scaffold: 7 Start: 10965507 End: 10969973 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 83 | 434 | 0 |
QNASEGGSQLYVPAGKWLTGSFSLISHFTLYLHKDAVLLASQDINEWPVIKPLPSYGRGRDAAAGRHTSLIFGTNLTDVIVTGDNGTIDGQGSFWWQQFH NKKLKYTRPYLIELMFSDNIQISNLTLLDSPSWNIHPVYSSNIIIKGITIIAPIRSPNTDGINPDSCTNTKIEDCYIVSGDDCVAVKSGWDEYGIKFGWP TKQLVIRRLTCISPYSATIALGSEMSGGIQDVRAEDITAVHTESGIRIKTAVGRGGYVKDIYVKKMTMHTMKWAFWITGNYGSHADKNYNHSALPEIKNI HYRDMVADNVSMAGNLEGISNDPFTGICISNVTITMAAKAKKQPWTCNDIEG |
Full Sequence |
---|
Protein Sequence Length: 480 Download |
MELLWKSHMK IHAMKLVYAL LLVTLMSSKV TECRKGKIIS TSFEYSALNC RAHSVSLKDF 60 GGVGDGKTSN TKAFKSAISH LSQNASEGGS QLYVPAGKWL TGSFSLISHF TLYLHKDAVL 120 LASQDINEWP VIKPLPSYGR GRDAAAGRHT SLIFGTNLTD VIVTGDNGTI DGQGSFWWQQ 180 FHNKKLKYTR PYLIELMFSD NIQISNLTLL DSPSWNIHPV YSSNIIIKGI TIIAPIRSPN 240 TDGINPDSCT NTKIEDCYIV SGDDCVAVKS GWDEYGIKFG WPTKQLVIRR LTCISPYSAT 300 IALGSEMSGG IQDVRAEDIT AVHTESGIRI KTAVGRGGYV KDIYVKKMTM HTMKWAFWIT 360 GNYGSHADKN YNHSALPEIK NIHYRDMVAD NVSMAGNLEG ISNDPFTGIC ISNVTITMAA 420 KAKKQPWTCN DIEGITSGVT PKPCDLLPEQ GKENIRDCDF PSDYLPIDML ELKQCTYSI* 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-19 | 60 | 437 | 395 | + polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-25 | 54 | 416 | 382 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-26 | 159 | 444 | 294 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 3.0e-26 | 52 | 441 | 404 | + Probable polygalacturonase At3g15720 | ||
COG5434 | PGU1 | 7.0e-56 | 55 | 350 | 319 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A7PZL3 | 0 | 32 | 479 | 41 | 487 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
GenBank | AAP33475.1 | 0 | 42 | 478 | 35 | 471 | polygalacturonase-like protein [Fragaria x ananassa] |
RefSeq | XP_002277736.1 | 0 | 32 | 479 | 29 | 475 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301370.1 | 0 | 25 | 479 | 14 | 467 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511903.1 | 0 | 1 | 479 | 1 | 469 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 53 | 419 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 53 | 419 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 53 | 419 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 53 | 419 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 7e-16 | 84 | 390 | 34 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |