Basic Information | |
---|---|
Species | Medicago truncatula |
Cazyme ID | Medtr7g059290.1 |
Family | PL1 |
Protein Properties | Length: 445 Molecular Weight: 49335.9 Isoelectric Point: 8.4203 |
Chromosome | Chromosome/Scaffold: 7 Start: 15616926 End: 15622750 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 158 | 363 | 0 |
IQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAFGACITIQFITNVIIHGVHIHDCKPTGNAMVRSSPSHFGWRTMADGDGISIFGSSHIWID HNSLSNCADGLVDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSAEPTINSQ GNRYLA |
Full Sequence |
---|
Protein Sequence Length: 445 Download |
MELRFSSHFI FTILAITLLF AFTNAIDSNE SRVVNGEEKL KMQSLNNSSM AESLSHDAIN 60 EHAVDNPEEI ASMVDTTIRN HTERRSLSFF SCGTGNPMDD CWRCDKLWYR RRKRLADCAI 120 GFGRNAIGGR DGRYYVVNNP RDDDPVNPRP GTLRHAVIQD RPLWIVFKRD MVITLKQELI 180 MNSFKTIDGR GANVHIAFGA CITIQFITNV IIHGVHIHDC KPTGNAMVRS SPSHFGWRTM 240 ADGDGISIFG SSHIWIDHNS LSNCADGLVD AIMGSTAITV SNNYFTHHNE VMLLGHSDSY 300 VRDKQMQVTI AYNHFGEGLI QRMPRCRHGY FHVVNNDYTH WVMYAIGGSA EPTINSQGNR 360 YLAPQNPFAK EVTKRVDTGS GIWKGWNWRS EGDLLLNGAF FTPSGRGAAA SYARASSLGA 420 KPSSLVGTLT AGAGVIKCRR GGMC* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-27 | 183 | 384 | 216 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-68 | 176 | 361 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-79 | 170 | 364 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN75298.1 | 0 | 26 | 444 | 22 | 445 | hypothetical protein [Vitis vinifera] |
EMBL | CBI33346.1 | 0 | 41 | 444 | 33 | 430 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002265100.1 | 0 | 26 | 444 | 22 | 445 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002285639.1 | 0 | 41 | 444 | 35 | 432 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002297822.1 | 0 | 5 | 444 | 11 | 450 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 96 | 436 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 96 | 436 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 9e-17 | 165 | 352 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 0.00000000000002 | 186 | 435 | 151 | 406 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 1vbl_A | 0.00000000000002 | 179 | 338 | 128 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |