Basic Information | |
---|---|
Species | Medicago truncatula |
Cazyme ID | Medtr7g078680.1 |
Family | GH28 |
Protein Properties | Length: 484 Molecular Weight: 53253.9 Isoelectric Point: 8.0861 |
Chromosome | Chromosome/Scaffold: 7 Start: 22008485 End: 22012177 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 86 | 434 | 0 |
SQGGSQLYVPAGKWLTGSFSLTSHFTLYLDRDAVLLASQDITEWPVLEPLPSYGRGRDAPAGRFRSLIFGTNLTDVIVTGGNGTIDGQGAFWWQQFHRKK LKYTRPYLIELMFSDSIQISNLTLLNSPSWNVHPVYSSNIIIQGITIIAPISSPNTDGINPDSCTNTKIEDCYIVSGDDCVAVKSGWDEYGIKFGWPTKQ LVIRRLTCISPFSATIALGSEMSGGIQDVRAEDITAIRTESGVRIKTAVGRGGYVKDIYVKRFTMHTMKWAFKMTGDYNSHADTHFDPNALPEIANINYR DVVAENVTIAARFQGISNDPFKGICIANVTLGMAVKAKKRSWTCTDIEG |
Full Sequence |
---|
Protein Sequence Length: 484 Download |
MKLLWKTHIR VQMIQIFLAI FVVTLVYPER VESRKAKIVT TSFVYNGINC RAHSASLTDF 60 GGVGDGNTSN TKAFQSAISH LSQYGSQGGS QLYVPAGKWL TGSFSLTSHF TLYLDRDAVL 120 LASQDITEWP VLEPLPSYGR GRDAPAGRFR SLIFGTNLTD VIVTGGNGTI DGQGAFWWQQ 180 FHRKKLKYTR PYLIELMFSD SIQISNLTLL NSPSWNVHPV YSSNIIIQGI TIIAPISSPN 240 TDGINPDSCT NTKIEDCYIV SGDDCVAVKS GWDEYGIKFG WPTKQLVIRR LTCISPFSAT 300 IALGSEMSGG IQDVRAEDIT AIRTESGVRI KTAVGRGGYV KDIYVKRFTM HTMKWAFKMT 360 GDYNSHADTH FDPNALPEIA NINYRDVVAE NVTIAARFQG ISNDPFKGIC IANVTLGMAV 420 KAKKRSWTCT DIEGMTSGVT PPPCDLLPDQ GPEKIGACDF PAESLPIDNL ELKKCSYSMK 480 YVM* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 4.0e-17 | 59 | 444 | 399 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-19 | 34 | 354 | 330 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-22 | 54 | 445 | 411 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-24 | 159 | 432 | 280 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 4.0e-53 | 55 | 350 | 318 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A7PZL3 | 0 | 30 | 481 | 39 | 489 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
GenBank | AAP33475.1 | 0 | 42 | 478 | 35 | 471 | polygalacturonase-like protein [Fragaria x ananassa] |
RefSeq | XP_002277736.1 | 0 | 30 | 481 | 27 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301370.1 | 0 | 31 | 482 | 20 | 470 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511903.1 | 0 | 1 | 482 | 1 | 472 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 53 | 416 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 53 | 416 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 53 | 416 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 53 | 416 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 3e-17 | 71 | 390 | 26 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
HO760745 | 289 | 187 | 475 | 0 |
ES810566 | 339 | 142 | 480 | 0 |
GO337766 | 286 | 174 | 459 | 0 |
HO784295 | 240 | 239 | 478 | 0 |
HO784295 | 133 | 89 | 221 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|